RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 UTS2O95399 124 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 CPN1P15169 458 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 TCEA1P23193 301 aaKnown RBP16.68■□□□□ 0.26
CLN3-202ENST00000355477 DPP4P27487 766 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 TIMP3P35625 211 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 SLC1A6P48664 564 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 STARP49675 285 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 DLX5P56178 289 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 MLC1Q15049 377 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 HSPB2Q16082 182 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 PDCD2Q16342 344 aaPredicted RBP16.68■□□□□ 0.26
CLN3-202ENST00000355477 CPTPQ5TA50 214 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 NSUN5P2Q63ZY6 315 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 POMZP3Q6PJE2 187 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 APOOLQ6UXV4 268 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 SZRD1Q7Z422 152 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 GALNT10Q86SR1 603 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 MARCH3Q86UD3 253 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 IFNEQ86WN2 208 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 LACC1Q8IV20 430 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 RIMKLAQ8IXN7 391 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 CDRT4Q8N9R6 151 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 SLC16A11Q8NCK7 471 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 OR2M3Q8NG83 312 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 DUSP19Q8WTR2 217 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 SLC9A6Q92581 669 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 COQ8BQ96D53 544 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 FAM120BQ96EK7 910 aaKnown RBP16.68■□□□□ 0.26
CLN3-202ENST00000355477 TRIB1Q96RU8 372 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 YIPF4Q9BSR8 244 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 FAM120CQ9NX05 1096 aaKnown RBP16.68■□□□□ 0.26
CLN3-202ENST00000355477 MED11Q9P086 117 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 PPP4R1LQ9P1A2 415 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 MRTO4Q9UKD2 239 aaKnown RBP16.68■□□□□ 0.26
CLN3-202ENST00000355477 ABCG2Q9UNQ0 655 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 RPH3AQ9Y2J0 694 aaPredicted RBP16.68■□□□□ 0.26
CLN3-202ENST00000355477 RAP2CQ9Y3L5 183 aa16.68■□□□□ 0.26
CLN3-202ENST00000355477 A0A1W2PRB8 838 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 KCNH1O95259 989 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 G6PDP11413 515 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 RPL3P39023 403 aaKnown RBP16.67■□□□□ 0.26
CLN3-202ENST00000355477 B3GALT5-AS1P59052 145 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 KRTAP10-9P60411 292 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 EMX2Q04743 252 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 SRYQ05066 204 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 STX5Q13190 355 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 DUSP5Q16690 384 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 SLC25A35Q3KQZ1 300 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 GRAMD1BQ3KR37 738 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 EXOSC6Q5RKV6 272 aaKnown RBP16.67■□□□□ 0.26
CLN3-202ENST00000355477 MFSD12Q6NUT3 480 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 PLXDC2Q6UX71 529 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 LURAP1LQ8IV03 231 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 DMRTC2Q8IXT2 367 aaPredicted RBP16.67■□□□□ 0.26
CLN3-202ENST00000355477 RELL2Q8NC24 303 aaPredicted RBP16.67■□□□□ 0.26
CLN3-202ENST00000355477 OR4K17Q8NGC6 315 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 ZPLD1Q8TCW7 415 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 OTUB1Q96FW1 271 aaPredicted RBP16.67■□□□□ 0.26
CLN3-202ENST00000355477 MS4A4EQ96PG1 132 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 TUBA1CQ9BQE3 449 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 AKTIPQ9H8T0 292 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 CALHM2Q9HA72 323 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 FBXO34Q9NWN3 711 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 DKKL1Q9UK85 242 aa16.67■□□□□ 0.26
CLN3-202ENST00000355477 EIF3LQ9Y262 564 aaKnown RBP16.67■□□□□ 0.26
CLN3-202ENST00000355477 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.67■□□□□ 0.26
CLN3-202ENST00000355477 HRNRQ86YZ3 2850 aaPredicted RBP16.67■□□□□ 0.26
CLN3-202ENST00000355477 CD8B2A6NJW9 211 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 SSTR2P30874 369 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 GCKP35557 465 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 LHX2P50458 406 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 RPL14P50914 215 aaKnown RBP16.66■□□□□ 0.26
CLN3-202ENST00000355477 ZNF136P52737 540 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 PSMD4P55036 377 aaKnown RBP16.66■□□□□ 0.26
CLN3-202ENST00000355477 DIO3P55073 304 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 DSCR4P56555 118 aaPredicted RBP16.66■□□□□ 0.26
CLN3-202ENST00000355477 SF3B4Q15427 424 aaKnown RBP eCLIP16.66■□□□□ 0.262e-7■■■■□ 24.8
CLN3-202ENST00000355477 VPS26BQ4G0F5 336 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 FIGNL1Q6PIW4 674 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 ZAR1Q86SH2 424 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 CROCCP2Q86T23 111 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 FAM110BQ8TC76 370 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 OR5P2Q8WZ92 322 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 LURAP1Q96LR2 239 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 SFXN2Q96NB2 322 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 G6PC3Q9BUM1 346 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 CXorf36Q9H7Y0 433 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 SDHAF3Q9NRP4 125 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 SNX8Q9Y5X2 465 aa16.66■□□□□ 0.26
CLN3-202ENST00000355477 MBD3L4A6NDZ8 208 aaPredicted RBP16.65■□□□□ 0.26
CLN3-202ENST00000355477 MBD3L3A6NE82 208 aaPredicted RBP16.65■□□□□ 0.26
CLN3-202ENST00000355477 MBD3L5A6NJ08 208 aaPredicted RBP16.65■□□□□ 0.26
CLN3-202ENST00000355477 KCNK2O95069 426 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 C6orf47O95873 294 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 IL2RAP01589 272 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 HMGN2P05204 90 aaKnown RBP16.65■□□□□ 0.26
CLN3-202ENST00000355477 MYZAPP0CAP1 466 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 DDX5P17844 614 aaKnown RBP16.65■□□□□ 0.26
CLN3-202ENST00000355477 PRPS1L1P21108 318 aa16.65■□□□□ 0.26
CLN3-202ENST00000355477 BMP5P22003 454 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms