RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 KIAA0040Q15053 153 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 TCEA2Q15560 299 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 EXOC3L2Q2M3D2 409 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 GTDC1Q4AE62 458 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ATP6AP1LQ52LC2 224 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ALKAL2Q6UX46 152 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 RBMS3Q6XE24 437 aaKnown RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 TMPRSS11BQ86T26 416 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 GKN2Q86XP6 184 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 TCTE3Q8IZS6 198 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 TMEM132CQ8N3T6 1108 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 SRFBP1Q8NEF9 429 aaKnown RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 OR7G3Q8NG95 312 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 OR8K5Q8NH50 307 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 FLVCR1-AS1Q8TAF5 88 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 FCRL1Q96LA6 429 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 PPP3R2Q96LZ3 170 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 NT5DC2Q9H857 520 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 SDR39U1Q9NRG7 319 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 AIG1Q9NVV5 245 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 TMEM45AQ9NWC5 275 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 SPASTQ9UBP0 616 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ELF5Q9UKW6 265 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 THADAQ6YHU6 1953 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 IGKV1-8A0A0C4DH67 115 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 A0A1W2PQL4 384 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 RPS10-NUDT3A0A1W2PQS6 291 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 FAM221BA6H8Z2 402 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 CLDN24A6NM45 220 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 FOXE1O00358 373 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 SCAMP2O15127 329 aaKnown RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ACPPP15309 386 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 RGS6P49758 472 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 CAPZA1P52907 286 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 RRAS2P62070 204 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 OLR1P78380 273 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 C1orf61Q13536 156 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ZSWIM7Q19AV6 140 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 C9orf152Q5JTZ5 239 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 OGFOD3Q6PK18 319 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 LINC00299Q6ZSB3 139 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 C17orf64Q86WR6 236 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 C2orf73Q8N5S3 287 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF548Q8NEK5 533 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 SLC37A2Q8TED4 501 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ZDHHC1Q8WTX9 485 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 SELENOMQ8WWX9 145 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 RBP7Q96R05 134 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ADAT1Q9BUB4 502 aaKnown RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 CRB3Q9BUF7 120 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 IKZF5Q9H5V7 419 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 UCK1Q9HA47 277 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 TMEM74BQ9NUR3 256 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ASH2LQ9UBL3 628 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 DNAJB9Q9UBS3 223 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 UBQLN2Q9UHD9 624 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 LMO7DNF2Z398 122 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 GATBO75879 557 aaKnown RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 RRASP10301 218 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 PSMB5P28074 263 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 DAPP51397 102 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 RUNX1T1Q06455 604 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 GPR18Q14330 331 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 P2RY14Q15391 338 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 TEAD4Q15561 434 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 TRIQKQ629K1 86 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 VASNQ6EMK4 673 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 MED27Q6P2C8 311 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 SLC9B2Q86UD5 537 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 ZFAND4Q86XD8 727 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 GDPD1Q8N9F7 314 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 LCN9Q8WX39 176 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 PATE1Q8WXA2 126 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 UFD1Q92890 307 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 PTP4A1Q93096 173 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 C11orf24Q96F05 449 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 CMSS1Q9BQ75 279 aaKnown RBP9.47□□□□□ -0.89
SYNE1-203ENST00000354674 SARGQ9BW04 601 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 SRRQ9GZT4 340 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 RHBGQ9H310 441 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 KCNMB2Q9Y691 235 aa9.47□□□□□ -0.89
SYNE1-203ENST00000354674 H0YC42 278 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 YY2O15391 372 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 GPX5O75715 221 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 PIAS2O75928 621 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 SERPINA1P01009 418 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 RAB3BP20337 219 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 RPS5P46782 204 aaKnown RBP9.46□□□□□ -0.89
SYNE1-203ENST00000354674 FASLGP48023 281 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 RPP38P78345 283 aaKnown RBP9.46□□□□□ -0.89
SYNE1-203ENST00000354674 REEP5Q00765 189 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 SLBPQ14493 270 aaKnown RBP eCLIP9.46□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF124Q15973 351 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 AP5B1Q2VPB7 878 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 RFX4Q33E94 735 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 RFTN2Q52LD8 501 aaPredicted RBP9.46□□□□□ -0.89
SYNE1-203ENST00000354674 SLC35F1Q5T1Q4 408 aa9.46□□□□□ -0.89
SYNE1-203ENST00000354674 BLOC1S3Q6QNY0 202 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms