RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 NPIPA2E9PIF3 369 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 BTN3A3O00478 584 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CYR61O00622 381 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 LSM1O15116 133 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FADS1O60427 444 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SOAT2O75908 522 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ANGPTL1O95841 491 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 IGHV3-13P01766 116 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 OPN1LWP04000 364 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NCK1P16333 377 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF26P17031 533 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 GLRXP35754 106 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PPICP45877 212 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PSMA6P60900 246 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SNRPD2P62316 118 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KRT85P78386 507 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MZT1Q08AG7 82 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TRAF2Q12933 501 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CUL3Q13618 768 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RPS6KA2Q15349 733 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PARP6Q2NL67 630 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 AP5B1Q2VPB7 878 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ARSJQ5FYB0 599 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 COQ5Q5HYK3 327 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 GLRA4Q5JXX5 417 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MORN3Q6PF18 240 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 STAC2Q6ZMT1 411 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 C17orf107Q6ZR85 190 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NOP9Q86U38 636 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RTN4RL2Q86UN3 420 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FAM129CQ86XR2 697 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 HOMER1Q86YM7 354 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KIRREL3Q8IZU9 778 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CA13Q8N1Q1 262 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PCYOX1LQ8NBM8 494 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PIK3C3Q8NEB9 887 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 DEFB108BQ8NET1 73 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 OR8H1Q8NGG4 311 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 OR52E1Q8NGJ3 308 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 OR1J2Q8NGS2 313 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 OR5K1Q8NHB7 308 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FGFBP3Q8TAT2 258 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MIPOL1Q8TD10 442 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 DHRS1Q96LJ7 313 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RPRD1AQ96P16 312 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RASL10BQ96S79 203 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CRACR2AQ9BSW2 395 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FUT8Q9BYC5 575 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MFFQ9GZY8 342 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NACA2Q9H009 215 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RASSF4Q9H2L5 321 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RABEP2Q9H5N1 569 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 WDCPQ9H6R7 721 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PATZ1Q9HBE1 687 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 C3orf14Q9HBI5 128 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NOCTQ9UK39 431 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 HHLA2Q9UM44 414 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MOKQ9UQ07 419 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM98Q9Y2Y6 226 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 REXO2Q9Y3B8 237 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 HDGFL3Q9Y3E1 203 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TSSC4Q9Y5U2 329 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ABCA13Q86UQ4 5058 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 AHNAK2Q8IVF2 5795 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ARHGAP32A7KAX9 2087 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PKD1L1Q8TDX9 2849 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MDC1Q14676 2089 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SYNJ2BP-COX16A0A087WUM0 186 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 GOLGA6L7A0A1B0GV03 622 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 BICDL2A1A5D9 508 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FAM90A27PA6NNH2 459 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 HMGB1P1B2RPK0 211 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 LY6LH3BQJ8 138 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ATP8B1O43520 1251 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TYROBPO43914 113 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 EIF4EBP3O60516 100 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 E2F6O75461 281 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ESRRBO95718 433 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KNG1P01042 644 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 P04436 131 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MELTFP08582 738 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC175P0C221 793 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC159P0C7I6 412 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SLC35G4P0C7Q5 338 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC172P0C7W6 258 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CFC1BP0CG36 223 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ATP1B2P14415 290 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 GALP22466 123 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ARL4AP40617 200 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NAGLUP54802 743 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KRTAP10-3P60369 221 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KRTAP10-7P60409 375 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ESRRGP62508 458 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NOMO3P69849 1222 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CDH17Q12864 832 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF154Q13106 437 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SELPLGQ14242 412 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 LONRF2Q1L5Z9 754 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ALFQ53S48 1182 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ELFN2Q5R3F8 820 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms