RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MLH3Q9UHC1 1453 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 ASXL1Q8IXJ9 1541 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 MAST1Q9Y2H9 1570 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 TRABD2BA6NFA1 517 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 MFSD2BA6NFX1 497 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 CYSRT1A8MQ03 144 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 E9PMD0 336 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 SGK494L7N484 410 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 RASGRF2O14827 1237 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 NOL3O60936 208 aaKnown RBP2.57□□□□□ -2
HMGB1-201ENST00000326004 HMMRO75330 724 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 TOXO94900 526 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 NDUFA7O95182 113 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 IGHG3P01860 377 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 SLC35G4P0C7Q5 338 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 IGFBP5P24593 272 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 PRDX6P30041 224 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 GMFBP60983 142 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 HAND2P61296 217 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 RUNX3Q13761 415 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 EIF2B1Q14232 305 aaKnown RBP2.57□□□□□ -2
HMGB1-201ENST00000326004 LTB4RQ15722 352 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 PPP1R3AQ16821 1122 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 Q1RN00 199 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 HSP90AA5PQ58FG0 334 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 MS4A13Q5J8X5 152 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 ATAD3CQ5T2N8 411 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 SEL1L2Q5TEA6 688 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 LEG1Q6P5S2 330 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 CCBE1Q6UXH8 406 aaPredicted RBP2.57□□□□□ -2
HMGB1-201ENST00000326004 ADAMTSL5Q6ZMM2 481 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 RBM43Q6ZSC3 357 aaKnown RBP2.57□□□□□ -2
HMGB1-201ENST00000326004 P4HA3Q7Z4N8 544 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 HPS6Q86YV9 775 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 TBC1D21Q8IYX1 336 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 CENPSQ8N2Z9 138 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 GPD1LQ8N335 351 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 FAM71CQ8NEG0 241 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 OR56B1Q8NGI3 324 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 OR52J3Q8NH60 311 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 WDR36Q8NI36 951 aaKnown RBP2.57□□□□□ -2
HMGB1-201ENST00000326004 TYMSOSQ8TAI1 123 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 VN1R17PQ8TDU5 208 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 N4BP2L2Q92802 583 aaPredicted RBP2.57□□□□□ -2
HMGB1-201ENST00000326004 NCLNQ969V3 563 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 SAMD8Q96LT4 415 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 C9orf85Q96MD7 179 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 TEX13BQ9BXU2 312 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 TIGARQ9NQ88 270 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 POLE3Q9NRF9 147 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 GPR83Q9NYM4 423 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 MBD2Q9UBB5 411 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 CLIP2Q9UDT6 1046 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 IL20RAQ9UHF4 553 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 FZR1Q9UM11 496 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 RABL2BQ9UNT1 228 aa2.57□□□□□ -2
HMGB1-201ENST00000326004 NUP188Q5SRE5 1749 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 TRBV7-9A0A0J9YWB2 115 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 ZSCAN5CA6NGD5 496 aaPredicted RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 C11orf98E9PRG8 122 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 H3BTX0 84 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 MPHOSPH10O00566 681 aaKnown RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 PEX11AO75192 247 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 RHBDL1O75783 438 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 IGSF6O95976 241 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 H2AFZP0C0S5 128 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 ARF4P18085 180 aaPredicted RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 PTPN4P29074 926 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 PTPN6P29350 595 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 PRDX2P32119 198 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 CHRNA3P32297 505 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 ACAA2P42765 397 aaKnown RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 FNTAP49354 379 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 METAP1P53582 386 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 GABPB1Q06547 395 aaPredicted RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 ZNF33BQ06732 778 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 PEX6Q13608 980 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 KARSQ15046 597 aaKnown RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 ZKSCAN8Q15776 578 aaPredicted RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 ZIC1Q15915 447 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 TIMM50Q3ZCQ8 353 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 SLC22A6Q4U2R8 563 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 PRR5LQ6MZQ0 368 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 VITQ6UXI7 678 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 TMEM26Q6ZUK4 368 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 NET1Q7Z628 596 aaPredicted RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 ARFGAP2Q8N6H7 521 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 LINC00612Q8N6U2 182 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 OR4F17Q8NGA8 305 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 CCDC110Q8TBZ0 833 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 FNDC8Q8TC99 324 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 RAB3CQ96E17 227 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 PIWIL1Q96J94 861 aaKnown RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 VPS39Q96JC1 886 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 OR4F4Q96R69 305 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 DPH5Q9H2P9 285 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 NGBQ9NPG2 151 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 SLC35D1Q9NTN3 355 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 DCAF13Q9NV06 445 aaKnown RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 KLRF1Q9NZS2 232 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms