RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 LNX2Q8N448 690 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 RELTQ969Z4 430 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 FAM46BQ96A09 425 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 ELP4Q96EB1 424 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 OR2M4Q96R27 311 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 FAM83CQ9BQN1 747 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 CLEC4EQ9ULY5 219 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 A3GALT2U3KPV4 340 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 MAS1P04201 325 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 CD3GP09693 182 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 NR2C1P13056 603 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 CTSOP43234 321 aaPredicted RBP10.89□□□□□ -0.67
VPS39-201ENST00000318006 TM4SF4P48230 202 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 TPMTP51580 245 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 PGAP1Q75T13 922 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.89□□□□□ -0.672e-11■■■■□ 23.5
VPS39-201ENST00000318006 ELP5Q8TE02 316 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 ZNF689Q96CS4 500 aaPredicted RBP10.89□□□□□ -0.67
VPS39-201ENST00000318006 CASD1Q96PB1 797 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 ALG8Q9BVK2 526 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 MEPEQ9NQ76 525 aaPredicted RBP10.89□□□□□ -0.67
VPS39-201ENST00000318006 GPRC5BQ9NZH0 403 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 PCDHGA2Q9Y5H1 932 aa10.89□□□□□ -0.67
VPS39-201ENST00000318006 GLOD5A6NK44 160 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 ACOT8O14734 319 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 CYP17A1P05093 508 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 RPS26P62854 115 aaKnown RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 LETMD1Q6P1Q0 360 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 CCDC116Q8IYX3 515 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 NAGSQ8N159 534 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 PNPLA1Q8N8W4 532 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 BOLLQ8N9W6 283 aaKnown RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 OR52P1PQ8NH57 321 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 SULT4A1Q9BR01 284 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 PNO1Q9NRX1 252 aaKnown RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 SERINC1Q9NRX5 453 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 RXFP3Q9NSD7 469 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 MAST2Q6P0Q8 1798 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 FABP7O15540 132 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 EMC8O43402 210 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 PFKLP17858 780 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 CDKN1CP49918 316 aaPredicted RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 IDH3GP51553 393 aaPredicted RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 DBPQ10586 325 aaPredicted RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 KIAA1211LQ6NV74 962 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 SLC9B2Q86UD5 537 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 SLC39A11Q8N1S5 342 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 RBPMSQ93062 196 aaKnown RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 ARNT2Q9HBZ2 717 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 IL26Q9NPH9 171 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 ZNF226Q9NYT6 803 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 CYP8B1Q9UNU6 501 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 A0A1W2PPL8 197 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 A6NL46 340 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 SLC43A1O75387 559 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 AHSA1O95433 338 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 RPS17P08708 135 aaKnown RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 C6P13671 934 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 LRRC26Q2I0M4 334 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 TMEM173Q86WV6 379 aaPredicted RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 CHST14Q8NCH0 376 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 OR56B4Q8NH76 319 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 WDR20Q8TBZ3 569 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 FAM46AQ96IP4 442 aaKnown RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 CMKLR1Q99788 373 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 ZFP57Q9NU63 452 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 COPS3Q9UNS2 423 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 MYO9BQ13459 2157 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 NRAPQ86VF7 1730 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 POM121CA8CG34 1229 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 SLC34A2O95436 690 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 ADRB3P13945 408 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 ARSBP15848 533 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 PPP3CBP16298 524 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 VIPR2P41587 438 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 POU6F2P78424 691 aaPredicted RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 PRRT3Q5FWE3 981 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 CBARPQ8N350 705 aaPredicted RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 OR5W2Q8NH69 310 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 PROKR1Q8TCW9 393 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 CD200R1Q8TD46 325 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 SETD7Q8WTS6 366 aaKnown RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 SLC25A44Q96H78 314 aaPredicted RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 C3orf30Q96M34 536 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 PELOQ9BRX2 385 aaKnown RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 METTL17Q9H7H0 456 aaPredicted RBP10.88□□□□□ -0.67
VPS39-201ENST00000318006 SYNPO2LQ9H987 977 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 NOX3Q9HBY0 568 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 TREX1Q9NSU2 369 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 PARPBPQ9NWS1 579 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 GFOD1Q9NXC2 390 aa10.88□□□□□ -0.67
VPS39-201ENST00000318006 STMND1H3BQB6 276 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 KLF8O95600 359 aaPredicted RBP10.87□□□□□ -0.67
VPS39-201ENST00000318006 RAB3DO95716 219 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 IFNA10P01566 189 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 IFNA4P05014 189 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 GNRHRP30968 328 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 SOX9P48436 509 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 DECR1Q16698 335 aa10.87□□□□□ -0.67
VPS39-201ENST00000318006 NUP43Q8NFH3 380 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms