RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 OR6C2Q9NZP2 312 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM181Q9P2C4 612 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 USP21Q9UK80 565 aa7.27□□□□□ -1.25
LIMCH1-201ENST00000313860 ERVV-2B6SEH9 535 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC16A5O15375 505 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 FCGR3BO75015 233 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC6A6P31641 620 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 THPOP40225 353 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 PPATQ06203 517 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 RAB6CQ53S08 254 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 C6orf141Q5SZD1 244 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 RNF141Q8WVD5 230 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MMP28Q9H239 520 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 NXF3Q9H4D5 531 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 C11orf49Q9H6J7 331 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 ZDHHC4Q9NPG8 344 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 NLGN3Q9NZ94 848 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CCDC187A0A096LP49 1063 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 A0A1W2PQC6 194 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 BUD23O43709 281 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SOX14O95416 240 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 PDGFBP01127 241 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MMP1P03956 469 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 LPLP06858 475 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CREB1P16220 341 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 GRM5P41594 1212 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 HK3P52790 923 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 EOGTQ5NDL2 527 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 ANKRD13BQ86YJ7 626 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC39A11Q8N1S5 342 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 ADPRHL1Q8NDY3 354 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CDK5RAP1Q96SZ6 601 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CHRNA10Q9GZZ6 450 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MRPL17Q9NRX2 175 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CLEC5AQ9NY25 188 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 NKX1-2Q9UD57 310 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 A0A0J9YYE9 177 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MEX3AA1L020 520 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 F5H5K5 113 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 ECI2O75521 394 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 LYPLA1O75608 230 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MT-ND6P03923 174 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC10A3P09131 477 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 GRPRP30550 384 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 OR3A1P47881 315 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 AESQ08117 197 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM183BQ1AE95 376 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 DPY19L2P1Q6NXN4 242 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF343Q6P1L6 599 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 TMPRSS12Q86WS5 348 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 GABRG1Q8N1C3 465 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 DRAXINQ8NBI3 349 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 GMCL1P1Q8NEA9 526 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 STYXQ8WUJ0 223 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CMTM3Q96MX0 182 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 COPS8Q99627 209 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SNRNP25Q9BV90 132 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 GAL3ST2Q9H3Q3 398 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 DPH3P1Q9H4G8 78 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 GPN2Q9H9Y4 310 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 JPH1Q9HDC5 661 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 FBXO6Q9NRD1 293 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 DNAJC27Q9NZQ0 273 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 BTNL2Q9UIR0 455 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SERTAD3Q9UJW9 196 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 TBX20Q9UMR3 447 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MADDQ8WXG6 1647 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 A0A0B4J293 547 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 hCG_1809904A0A1W2PP81 198 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 A0A1W2PPE2 198 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 A0A1W2PR64 198 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 A0A1W2PRV1 198 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CD8B2A6NJW9 211 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 C9JVG2 144 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 RBAK-RBAKDNI3L0D1 243 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 M0R143 59 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 NFKBIEO00221 500 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 FOXD2O60548 495 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SEMA4FO95754 770 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 IL4P05112 153 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CD8BP10966 210 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 PEX2P28328 305 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 PTGER4P35408 488 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 FRKP42685 505 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 B4GALNT1Q00973 533 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 KCNC4Q03721 635 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CCL15Q16663 113 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SOHLH1Q5JUK2 328 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 ENTPD8Q5MY95 495 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 GPRIN3Q6ZVF9 776 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SGPP2Q8IWX5 399 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 DCP1BQ8IZD4 617 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 ENGASEQ8NFI3 743 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 OR6N1Q8NGY5 312 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 FEZF2Q8TBJ5 459 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MEGF10Q96KG7 1140 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 TRAF4Q9BUZ4 470 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC25A31Q9H0C2 315 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM140Q9NV12 185 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms