RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 GNG13Q9P2W3 67 aa7.76□□□□□ -1.17
VPS41-202ENST00000310301 INTS6Q9UL03 887 aaKnown RBP7.76□□□□□ -1.17
VPS41-202ENST00000310301 CLEC4EQ9ULY5 219 aa7.76□□□□□ -1.17
VPS41-202ENST00000310301 LSM5Q9Y4Y9 91 aaKnown RBP7.76□□□□□ -1.17
VPS41-202ENST00000310301 PCDHGA7Q9Y5G6 932 aa7.76□□□□□ -1.17
VPS41-202ENST00000310301 PCDHGA6Q9Y5G7 932 aa7.76□□□□□ -1.17
VPS41-202ENST00000310301 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 EPOP01588 193 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 CASP3P42574 277 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 MAGEB1P43366 347 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 STC1P52823 247 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 MLIPQ5VWP3 458 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 LAIR1Q6GTX8 287 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 NOXRED1Q6NXP6 359 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 BLOC1S3Q6QNY0 202 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 FAM83HQ6ZRV2 1179 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 TMEFF1Q8IYR6 380 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 OR56B2PQ8NGI1 322 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 SP7Q8TDD2 431 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 CHPT1Q8WUD6 406 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 GAB3Q8WWW8 586 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 FAM46BQ96A09 425 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 FEVQ99581 238 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 CMKLR1Q99788 373 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 OR51E2Q9H255 320 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 SYNPO2LQ9H987 977 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 LOC102723532A0A0G2JNH3 316 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 F11P03951 625 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 RHCEP18577 417 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 SOX9P48436 509 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 RAB8AP61006 207 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 RAB11BQ15907 218 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 PAPD4Q6PIY7 484 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 FIP1L1Q6UN15 594 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 ALKAL1Q6UXT8 129 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 C1orf210Q8IVY1 113 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 MRPL41Q8IXM3 137 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 SVBPQ8N300 66 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 OR1J4Q8NGS1 313 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 FCRL3Q96P31 734 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 SLC2A13Q96QE2 648 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 PCED1AQ9H1Q7 454 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 SDHAF3Q9NRP4 125 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 NME7Q9Y5B8 376 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 RPS10-NUDT3A0A1W2PQS6 291 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 ARPC1BO15143 372 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 CASC3O15234 703 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 ADAM12O43184 909 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 LDB2O43679 373 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 AK4P27144 223 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 ETV4P43268 484 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 RPS10P46783 165 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 ZNF136P52737 540 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 NUBP1P53384 320 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 ACTBP60709 375 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 ACTG1P63261 375 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 TFF2Q03403 129 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 DBPQ10586 325 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 POU4F2Q12837 409 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 BCL2A1Q16548 175 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 BCL7AQ4VC05 210 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 TECRLQ5HYJ1 363 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 HMGN2P46Q86SG4 172 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 SPARTQ8N0X7 666 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 PARP16Q8N5Y8 322 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 ACBD7Q8N6N7 88 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 KDM1BQ8NB78 822 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 PROKR1Q8TCW9 393 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 SLC29A1Q99808 456 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 THAP7Q9BT49 309 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 Q9N2J8 555 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 ACOT13Q9NPJ3 140 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 PCTPQ9UKL6 214 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 NRXN2Q9P2S2 1712 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 BEST1O76090 585 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 FHP07954 510 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 H2BFMP0C1H6 154 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 TPT1P13693 172 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 CFL1P23528 166 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 SOX3P41225 446 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 GCGRP47871 477 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 TGM4P49221 684 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 RNF144AP50876 292 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 MS4A2Q01362 244 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 PAFAH1B3Q15102 231 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 ZNF791Q3KP31 576 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 PM20D1Q6GTS8 502 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 ZNF283Q8N7M2 679 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS41-202ENST00000310301 SUMF2Q8NBJ7 301 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 SLC5A11Q8WWX8 675 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 CHFRQ96EP1 664 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 URM1Q9BTM9 101 aaKnown RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 EDEM2Q9BV94 578 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 TMEM121BQ9BXQ6 578 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 RARRES3Q9UL19 164 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 COPS3Q9UNS2 423 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 UBE2J1Q9Y385 318 aaPredicted RBP7.75□□□□□ -1.17
VPS41-202ENST00000310301 ATG4BQ9Y4P1 393 aa7.75□□□□□ -1.17
VPS41-202ENST00000310301 CFAP20Q9Y6A4 193 aaKnown RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms