RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 KLHL33A6NCF5 533 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 A6NIN4 97 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 SYT7O43581 403 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 DENRO43583 198 aaKnown RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 ZNF217O75362 1048 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 MYF6P23409 242 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 SSTR4P31391 388 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 NFATC3Q12968 1075 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 TMEM31Q5JXX7 168 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 SLC15A4Q8N697 577 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 MAFIPQ8WZ33 124 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 CDS1Q92903 461 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 DDIT4LQ96D03 193 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 NECTIN4Q96NY8 510 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 CASD1Q96PB1 797 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 SERINC2Q96SA4 455 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 SLC30A3Q99726 388 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 KLF16Q9BXK1 252 aaPredicted RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 ZNF696Q9H7X3 374 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 GABRR3A8MPY1 467 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 HTR3BO95264 441 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 KNG1P01042 644 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 IFNA2P01563 188 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 LCATP04180 440 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 THBS2P35442 1172 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 PSMB10P40306 273 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 PBX2P40425 430 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 SUOXP51687 545 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 FXYD4P59646 89 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 MLC1Q15049 377 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 HMBOX1Q6NT76 420 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 KNDC1Q76NI1 1749 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 PIWIL3Q7Z3Z3 882 aaKnown RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 LIX1LQ8IVB5 337 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 SERPINA12Q8IW75 414 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 RCBTB1Q8NDN9 531 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 NDNFQ8TB73 568 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 CCNL2Q96S94 520 aaPredicted RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 PELI2Q9HAT8 420 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 MEIS3P1A6NDR6 274 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 TRIM64BA6NI03 449 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 CREBL2O60519 120 aaPredicted RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 DIRAS3O95661 229 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 FUT1P19526 365 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 AKR1C2P52895 323 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 RHEBQ15382 184 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 HNRNPA1L2Q32P51 320 aaKnown RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 COQ5Q5HYK3 327 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 GPR157Q5UAW9 335 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 VWA5B2Q8N398 1253 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 TOE1Q96GM8 510 aaKnown RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 ALG8Q9BVK2 526 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 TXLNGYQ9BZA5 131 aa10.83□□□□□ -0.68
USP53-201ENST00000274030 FAM208AQ9UK61 1670 aaKnown RBP10.83□□□□□ -0.68
USP53-201ENST00000274030 NDUFB2O95178 105 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 PABPC4LP0CB38 370 aaKnown RBP10.82□□□□□ -0.68
USP53-201ENST00000274030 WDR5P61964 334 aaKnown RBP10.82□□□□□ -0.68
USP53-201ENST00000274030 MARCH8Q5T0T0 291 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 PIP5KL1Q5T9C9 394 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 TMEM205Q6UW68 189 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 SLC39A11Q8N1S5 342 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 FTMTQ8N4E7 242 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 MS4A15Q8N5U1 240 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 ASCC1Q8N9N2 400 aaKnown RBP10.82□□□□□ -0.68
USP53-201ENST00000274030 TOMM40LQ969M1 308 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 DNTTIP1Q9H147 329 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 SLC25A18Q9H1K4 315 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 BTNL2Q9UIR0 455 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 MROH6A6NGR9 719 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 BMP2P12643 396 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 TIMP2P16035 220 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 XCR1P46094 333 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 CDK3Q00526 305 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 CDK5R2Q13319 367 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 EIF2B1Q14232 305 aaKnown RBP10.82□□□□□ -0.68
USP53-201ENST00000274030 FBXO46Q6PJ61 603 aaPredicted RBP10.82□□□□□ -0.68
USP53-201ENST00000274030 PRSS48Q7RTY5 328 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 RHBDD1Q8TEB9 315 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 CUEDC1Q9NWM3 386 aaPredicted RBP10.82□□□□□ -0.68
USP53-201ENST00000274030 UBQLN2Q9UHD9 624 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 NAALAD2Q9Y3Q0 740 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 TVP23AA6NH52 213 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 TNFSF12O43508 249 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 DDCP20711 480 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 PLEKHN1Q494U1 663 aaPredicted RBP10.82□□□□□ -0.68
USP53-201ENST00000274030 ABHD17BQ5VST6 288 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 PDZD3Q86UT5 571 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 CDRT4Q8N9R6 151 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 OR13J1Q8NGT2 312 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 ITFG2Q969R8 447 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 ADOQ96SZ5 270 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 RTP3Q9BQQ7 232 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 CLSTN3Q9BQT9 956 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 SLC6A16Q9GZN6 736 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 PPIL3Q9H2H8 161 aaKnown RBP10.82□□□□□ -0.68
USP53-201ENST00000274030 MYNNQ9NPC7 610 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 CARD8Q9Y2G2 431 aa10.82□□□□□ -0.68
USP53-201ENST00000274030 PHRF1Q9P1Y6 1649 aaKnown RBP10.82□□□□□ -0.68
USP53-201ENST00000274030 IFNA5P01569 189 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms