RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 GJA5P36382 358 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 PRPS1P60891 318 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 TRA2BP62995 288 aaKnown RBP10.16□□□□□ -0.78
CD44-201ENST00000263398 NKX3-2P78367 333 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 HHEXQ03014 270 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 RAB11BQ15907 218 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 SLC5A12Q1EHB4 618 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 BCL2L15Q5TBC7 163 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 ANKRD54Q6NXT1 300 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 FIP1L1Q6UN15 594 aaKnown RBP10.16□□□□□ -0.78
CD44-201ENST00000263398 OR51L1Q8NGJ5 315 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 OR5L2Q8NGL0 311 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 OR6Q1Q8NGQ2 317 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 RHOXF1Q8NHV9 184 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 TMEM239Q8WW34 195 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 KHSRPQ92945 711 aaKnown RBP eCLIP10.16□□□□□ -0.78
CD44-201ENST00000263398 FAM46BQ96A09 425 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 ISL2Q96A47 359 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 CPPED1Q9BRF8 314 aaPredicted RBP10.16□□□□□ -0.78
CD44-201ENST00000263398 SLC5A7Q9GZV3 580 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 OR2S2Q9NQN1 319 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 ZNF701Q9NV72 531 aaPredicted RBP10.16□□□□□ -0.78
CD44-201ENST00000263398 VSTM2BA6NLU5 285 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 CLDN24A6NM45 220 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 KIAA0355O15063 1070 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 FRS3O43559 492 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 PPP1R3DO95685 299 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 SFTPBP07988 381 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 SLC7A9P82251 487 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 MAP4K2Q12851 820 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 SERTAD2Q14140 314 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 ELOAQ14241 798 aaKnown RBP10.16□□□□□ -0.78
CD44-201ENST00000263398 SELPLGQ14242 412 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 NKAPLQ5M9Q1 402 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 TTLL10Q6ZVT0 673 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 OR9A2Q8NGT5 310 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 NEDD4LQ96PU5 975 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 WDR77Q9BQA1 342 aaPredicted RBP10.16□□□□□ -0.78
CD44-201ENST00000263398 MRI1Q9BV20 369 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 SAP130Q9H0E3 1048 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 MRPL15Q9P015 296 aaKnown RBP10.16□□□□□ -0.78
CD44-201ENST00000263398 LHX3Q9UBR4 397 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 NUFIP1Q9UHK0 495 aaKnown RBP10.16□□□□□ -0.78
CD44-201ENST00000263398 SLC7A7Q9UM01 511 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 SCML1Q9UN30 329 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 ADAMTS7Q9UKP4 1686 aa10.16□□□□□ -0.78
CD44-201ENST00000263398 DDX60Q8IY21 1712 aaKnown RBP10.15□□□□□ -0.78
CD44-201ENST00000263398 H7C417 338 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 M0R129 80 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 SOCS7O14512 581 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 ACOT8O14734 319 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 ADAMTS4O75173 837 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 HTR2BP41595 481 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 SEMA3BQ13214 749 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 GGTA1PQ4G0N0 100 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 ZNF542PQ5EBM4 170 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 GARNL3Q5VVW2 1013 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 HAGHLQ6PII5 290 aaPredicted RBP10.15□□□□□ -0.78
CD44-201ENST00000263398 CHRDL2Q6WN34 429 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 Q6ZSR9 355 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 MAVSQ7Z434 540 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 B3GNT8Q7Z7M8 397 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 FTMTQ8N4E7 242 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 OR5D16Q8NGK9 328 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 GAL3ST3Q96A11 431 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 DNAJA3Q96EY1 480 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 PGAM5Q96HS1 289 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 C7orf34Q96L11 122 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 CLSTN3Q9BQT9 956 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 OR10A4Q9H209 315 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 GPR89AB7ZAQ6 455 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 GPR89BP0CG08 455 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 TIMP2P16035 220 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 PRLHRP49683 370 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 HBA1P69905 142 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 CCINQ13939 588 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 MFSD13AQ14CX5 517 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 CDK10Q15131 360 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 CCDC58Q4VC31 144 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 NADSYN1Q6IA69 706 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 OR5AK2Q8NH90 309 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 TSNAXQ99598 290 aaKnown RBP10.15□□□□□ -0.78
CD44-201ENST00000263398 SLC46A2Q9BY10 475 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 HSFX1Q9UBD0 423 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 SLC7A11Q9UPY5 501 aa10.15□□□□□ -0.78
CD44-201ENST00000263398 OR52A4PA6NMU1 304 aa10.15□□□□□ -0.79
CD44-201ENST00000263398 CYP17A1P05093 508 aa10.15□□□□□ -0.79
CD44-201ENST00000263398 ARAFP10398 606 aa10.15□□□□□ -0.79
CD44-201ENST00000263398 TACR1P25103 407 aa10.15□□□□□ -0.79
CD44-201ENST00000263398 GIPRP48546 466 aa10.15□□□□□ -0.79
CD44-201ENST00000263398 PARS2Q7L3T8 475 aaKnown RBP10.15□□□□□ -0.79
CD44-201ENST00000263398 THAP3Q8WTV1 239 aaPredicted RBP10.15□□□□□ -0.79
CD44-201ENST00000263398 TCEAL4Q96EI5 215 aa10.15□□□□□ -0.79
CD44-201ENST00000263398 NECAB3Q96P71 396 aaPredicted RBP10.15□□□□□ -0.79
CD44-201ENST00000263398 CASD1Q96PB1 797 aa10.15□□□□□ -0.79
CD44-201ENST00000263398 C1orf105O95561 183 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 AMY2BP19961 511 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 HNRNPA2B1P22626 353 aaKnown RBP10.14□□□□□ -0.79
CD44-201ENST00000263398 PRSS3P35030 304 aa10.14□□□□□ -0.79
CD44-201ENST00000263398 FGFBP1Q14512 234 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms