RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 GGT3PA6NGU5 568 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 ZNF726A6NNF4 738 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 TO15178 435 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 CASC3O15234 703 aaKnown RBP9.9□□□□□ -0.82
VCL-201ENST00000211998 CYTIPO60759 359 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 MLLT11Q13015 90 aaPredicted RBP9.9□□□□□ -0.82
VCL-201ENST00000211998 RAB33AQ14088 237 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 GPR139Q6DWJ6 353 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 TMEM150AQ86TG1 271 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 OR2A12Q8NGT7 310 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 SLAMF9Q96A28 289 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 LMF1Q96S06 567 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 VPS25Q9BRG1 176 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 ALG8Q9BVK2 526 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 PNO1Q9NRX1 252 aaKnown RBP9.9□□□□□ -0.82
VCL-201ENST00000211998 NLE1Q9NVX2 485 aaPredicted RBP9.9□□□□□ -0.82
VCL-201ENST00000211998 ASH2LQ9UBL3 628 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 CORINQ9Y5Q5 1042 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 INSL5Q9Y5Q6 135 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 MEIS3P1A6NDR6 274 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 MAGEB4O15481 346 aaPredicted RBP9.9□□□□□ -0.82
VCL-201ENST00000211998 S100A8P05109 93 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 CCL5P13501 91 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 ADRB3P13945 408 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 CLCNKAP51800 687 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 UBE2KP61086 200 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 HTR4Q13639 388 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 TXNDC8Q6A555 127 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 AGTRAPQ6RW13 159 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 SLC9B2Q86UD5 537 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 OR4K5Q8NGD3 323 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 OR10Z1Q8NGY1 313 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 MARC2Q969Z3 335 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 CNN2Q99439 309 aaKnown RBP9.9□□□□□ -0.82
VCL-201ENST00000211998 SMIM3Q9BZL3 60 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 SEC61A2Q9H9S3 476 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 IGSF5Q9NSI5 407 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 CLEC4EQ9ULY5 219 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 A0A0U1RQK1 487 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 NDUFS4O43181 175 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 LIPCP11150 499 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 AMZ1Q400G9 498 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 LINC00299Q6ZSB3 139 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 ZNF461Q8TAF7 563 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 SYNPRQ8TBG9 265 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 ZNF778Q96MU6 729 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 CDC6Q99741 560 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 PLSCR3Q9NRY6 295 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 VAPAQ9P0L0 249 aa9.9□□□□□ -0.82
VCL-201ENST00000211998 A0A1W2PS29 197 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 I6L893 689 aaPredicted RBP9.9□□□□□ -0.83
VCL-201ENST00000211998 SOD2P04179 222 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 CBLP22681 906 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 MRPS10P82664 201 aaKnown RBP9.9□□□□□ -0.83
VCL-201ENST00000211998 OC90Q02509 493 aaPredicted RBP9.9□□□□□ -0.83
VCL-201ENST00000211998 SELENBP1Q13228 472 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 HMGN3Q15651 99 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 ZNF792Q3KQV3 632 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 MS4A13Q5J8X5 152 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 RPL13AP3Q6NVV1 102 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 SLC22A25Q6T423 547 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 Q6ZVU0 165 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 SLC46A3Q7Z3Q1 461 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 ELP5Q8TE02 316 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 FAM46AQ96IP4 442 aaKnown RBP9.9□□□□□ -0.83
VCL-201ENST00000211998 ORAI3Q9BRQ5 295 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 RNF39Q9H2S5 420 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 MINDY3Q9H8M7 445 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 B3GAT2Q9NPZ5 323 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 IFT172Q9UG01 1749 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 SNED1Q8TER0 1413 aa9.9□□□□□ -0.83
VCL-201ENST00000211998 A0A1W2PQ45 241 aaPredicted RBP9.89□□□□□ -0.83
VCL-201ENST00000211998 A0A1W2PQY0 241 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 PRAMEF11O60813 436 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 POP7O75817 140 aaKnown RBP9.89□□□□□ -0.83
VCL-201ENST00000211998 STATHP02808 62 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 CFIP05156 583 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 POLR2IP36954 125 aaKnown RBP9.89□□□□□ -0.83
VCL-201ENST00000211998 ACVRL1P37023 503 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 SLC11A1P49279 550 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 RPS26P62854 115 aaKnown RBP9.89□□□□□ -0.83
VCL-201ENST00000211998 KIAA0141Q14154 515 aaPredicted RBP9.89□□□□□ -0.83
VCL-201ENST00000211998 NLRC3Q7RTR2 1065 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 GLYATL2Q8WU03 294 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 Q9N2J8 555 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 KLK4Q9Y5K2 254 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 NPIPA7E9PJI5 369 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 FBXO24O75426 580 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 SBK2P0C263 348 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 NPIPA8P0DM63 369 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 ZNF8P17098 575 aaPredicted RBP9.89□□□□□ -0.83
VCL-201ENST00000211998 DHPSP49366 369 aaPredicted RBP9.89□□□□□ -0.83
VCL-201ENST00000211998 HTR6P50406 440 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 OR10K2Q6IF99 312 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 TSSK4Q6SA08 328 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 ISCA2Q86U28 154 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 CYB5D2Q8WUJ1 264 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 OR5P2Q8WZ92 322 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 SHISA4Q96DD7 197 aa9.89□□□□□ -0.83
VCL-201ENST00000211998 GSTO2Q9H4Y5 243 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms