RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	EVI2B	P34910	448 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	PRKAG1	P54619	331 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	PSMD4	P55036	377 aa	Known RBP	13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	NUP107	P57740	925 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	CASP8	Q14790	479 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	VPS26B	Q4G0F5	336 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	EIPR1	Q53HC9	387 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	C1orf185	Q5T7R7	199 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	B3GNT6	Q6ZMB0	384 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	SZRD1	Q7Z422	152 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	PLCZ1	Q86YW0	608 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	RIMKLA	Q8IXN7	391 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	KRTCAP2	Q8N6L1	136 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	NATD1	Q8N6N6	113 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	WDSUB1	Q8N9V3	476 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	MGARP	Q8TDB4	240 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	CA5BP1	Q8WTZ4	195 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	ASB5	Q8WWX0	329 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	HOXB13	Q92826	284 aa	Predicted RBP	13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	MS4A4E	Q96PG1	132 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	SERHL	Q9NQF3	203 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	ALKBH4	Q9NXW9	302 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	NKIRAS1	Q9NYS0	192 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	FAM215A	Q9Y5M1	114 aa		13.71	□□□□□ -0.21
PHGDH-231	ENST00000641939	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939		A0A1W2PRB8	838 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	KCNH1	O95259	989 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	IL33	O95760	270 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	MAP3K8	P41279	467 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	GAS1	P54826	345 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	C21orf58	P58505	322 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	PRR5	P85299	388 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	CRYZ	Q08257	329 aa	Known RBP	13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	NHSL2	Q5HYW2	709 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	WIPI1	Q5MNZ9	446 aa	Predicted RBP	13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	RTL6	Q6ICC9	239 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	YRDC	Q86U90	279 aa	Known RBP	13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	CDRT4	Q8N9R6	151 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	FAM83F	Q8NEG4	500 aa	Predicted RBP	13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	GPR151	Q8TDV0	419 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	OR5P2	Q8WZ92	322 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	COQ8B	Q96D53	544 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	FAM120B	Q96EK7	910 aa	Known RBP	13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	DTNBP1	Q96EV8	351 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	GIMAP5	Q96F15	307 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	TIMP4	Q99727	224 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	TTYH2	Q9BSA4	534 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	BHLHE41	Q9C0J9	482 aa	Predicted RBP	13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	SIRT3	Q9NTG7	399 aa	Predicted RBP	13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	PNPO	Q9NVS9	261 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	ABCG2	Q9UNQ0	655 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	RNF6	Q9Y252	685 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	SLC6A5	Q9Y345	797 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	DOCK7	Q96N67	2140 aa		13.7	□□□□□ -0.22
PHGDH-231	ENST00000641939	GXYLT2	A0PJZ3	443 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	HNRNPR	O43390	633 aa	Known RBP	13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	NKX2-2	O95096	273 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	GLI4	P10075	376 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	CHRNB4	P30926	498 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	PTGER4	P35408	488 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	GCK	P35557	465 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	RFX3	P48380	749 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	CLDN8	P56748	225 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	LSM12	Q3MHD2	195 aa	Known RBP	13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	VASN	Q6EMK4	673 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	ZCCHC12	Q6PEW1	402 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	PM20D2	Q8IYS1	436 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	ULK2	Q8IYT8	1036 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	LRRC34	Q8IZ02	419 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	OR10Q1	Q8NGQ4	319 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	RAB3IL1	Q8TBN0	382 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	NUDT8	Q8WV74	236 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	PIK3R3	Q92569	461 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	SLC9A6	Q92581	669 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	RMND5B	Q96G75	393 aa	Predicted RBP	13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	DUSP26	Q9BV47	211 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	NUF2	Q9BZD4	464 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	OR2B2	Q9GZK3	357 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	THAP1	Q9NVV9	213 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	FAM120C	Q9NX05	1096 aa	Known RBP	13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	FBXL2	Q9UKC9	423 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	SNX8	Q9Y5X2	465 aa		13.69	□□□□□ -0.22
PHGDH-231	ENST00000641939	AHRR	A9YTQ3	701 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	SCO2	O43819	266 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	FADS1	O60427	444 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	SNN	O75324	88 aa	Predicted RBP	13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	ACTL6A	O96019	429 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	ACP2	P11117	423 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	BMP7	P18075	431 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	SRD5A2	P31213	254 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	PRIM2	P49643	509 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	CLK3	P49761	638 aa	Known RBP	13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	DIO3	P55073	304 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	AGBL2	Q5U5Z8	902 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	ATG16L1	Q676U5	607 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	OR5M10	Q6IEU7	315 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	MFSD12	Q6NUT3	480 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	CAMKMT	Q7Z624	323 aa		13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	CCDC71	Q8IV32	467 aa	Predicted RBP	13.68	□□□□□ -0.22
PHGDH-231	ENST00000641939	TRIM42	Q8IWZ5	723 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms