RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RANBP3LQ86VV4 465 aaPredicted RBP2.25□□□□□ -2.05
CD44-239ENST00000639002 PPP1R27Q86WC6 154 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 GOT1L1Q8NHS2 421 aaPredicted RBP2.25□□□□□ -2.05
CD44-239ENST00000639002 NEIL2Q969S2 332 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 ATP6V1E2Q96A05 226 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 MARCH5Q9NX47 278 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 NARFQ9UHQ1 456 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 ENTPD4Q9Y227 616 aa2.25□□□□□ -2.05
CD44-239ENST00000639002 C5orf51A6NDU8 294 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 CACNB4O00305 520 aaPredicted RBP2.24□□□□□ -2.05
CD44-239ENST00000639002 ARPC1BO15143 372 aaKnown RBP2.24□□□□□ -2.05
CD44-239ENST00000639002 STX6O43752 255 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 HIST1H2AGP0C0S8 130 aaPredicted RBP2.24□□□□□ -2.05
CD44-239ENST00000639002 HTR1FP30939 366 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 COPB2P35606 906 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 NUP107P57740 925 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 RPS6P62753 249 aaKnown RBP2.24□□□□□ -2.05
CD44-239ENST00000639002 YWHAHQ04917 246 aaPredicted RBP2.24□□□□□ -2.05
CD44-239ENST00000639002 RAB35Q15286 201 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 CYP51A1Q16850 503 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 XKR4Q5GH76 650 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 DCST2Q5T1A1 773 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 DPY19L2P2Q6ZN68 376 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 ADAMTSL2Q86TH1 951 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 PARGQ86W56 976 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.24□□□□□ -2.05
CD44-239ENST00000639002 TMEM37Q8WXS4 190 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 HIST1H2ACQ93077 130 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 DEFB118Q96PH6 123 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 ZCCHC3Q9NUD5 404 aaKnown RBP2.24□□□□□ -2.05
CD44-239ENST00000639002 EHFQ9NZC4 300 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 ZNF282Q9UDV7 671 aaPredicted RBP2.24□□□□□ -2.05
CD44-239ENST00000639002 MIOXQ9UGB7 285 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 LCMT1Q9UIC8 334 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 DUSP12Q9UNI6 340 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 PSG11Q9UQ72 335 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 LIPT1Q9Y234 373 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 DHRS7Q9Y394 339 aa2.24□□□□□ -2.05
CD44-239ENST00000639002 TRBV6-6A0A0A6YYG2 114 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 CFLARO15519 480 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 SCRG1O75711 98 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 APRTP07741 180 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 STSP08842 583 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 UROSP10746 265 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 CALRP27797 417 aaKnown RBP2.23□□□□□ -2.05
CD44-239ENST00000639002 CDH5P33151 784 aaPredicted RBP2.23□□□□□ -2.05
CD44-239ENST00000639002 OC90Q02509 493 aaPredicted RBP2.23□□□□□ -2.05
CD44-239ENST00000639002 DPYSL3Q14195 570 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 EOGTQ5NDL2 527 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 OR5M10Q6IEU7 315 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 TMCO5AQ8N6Q1 288 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 C20orf203Q8NBC4 194 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 DCUN1D4Q92564 292 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 RDH5Q92781 318 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 TMEM101Q96IK0 257 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 NAP1L5Q96NT1 182 aaPredicted RBP2.23□□□□□ -2.05
CD44-239ENST00000639002 SMIM14Q96QK8 99 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 FAM114A2Q9NRY5 505 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 ABCB8Q9NUT2 735 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 NECAP2Q9NVZ3 263 aa2.23□□□□□ -2.05
CD44-239ENST00000639002 ZNF223Q9UK11 482 aaPredicted RBP2.23□□□□□ -2.05
CD44-239ENST00000639002 NAP1L2Q9ULW6 460 aaPredicted RBP2.23□□□□□ -2.05
CD44-239ENST00000639002 SMIM30A4D0T7 59 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 LRRD1A4D1F6 860 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 DHRS7CA6NNS2 312 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 E9PLD3 99 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 BBOX1O75936 387 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 CABYRO75952 493 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 GSTA1P08263 222 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 CD1BP29016 333 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 TCF7P36402 384 aaPredicted RBP2.22□□□□□ -2.05
CD44-239ENST00000639002 NUDT1P36639 197 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 NLRP11P59045 1033 aaKnown RBP2.22□□□□□ -2.05
CD44-239ENST00000639002 PDE7AQ13946 482 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 AARDQ4LEZ3 155 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 METTL11BQ5VVY1 283 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 PNCKQ6P2M8 343 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 HACD2Q6Y1H2 254 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 C17orf82Q86X59 251 aaPredicted RBP2.22□□□□□ -2.05
CD44-239ENST00000639002 SUMF2Q8NBJ7 301 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 NEIL3Q8TAT5 605 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 CFAP36Q96G28 342 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 ADPGKQ9BRR6 497 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 PNO1Q9NRX1 252 aaKnown RBP2.22□□□□□ -2.05
CD44-239ENST00000639002 DCAF13Q9NV06 445 aaKnown RBP2.22□□□□□ -2.05
CD44-239ENST00000639002 TRPC4Q9UBN4 977 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 MAD2L2Q9UI95 211 aa2.22□□□□□ -2.05
CD44-239ENST00000639002 TRIOBPQ9H2D6 2365 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 A0A0J9YXY3 114 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 FAM170AA1A519 330 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 TUBAL3A6NHL2 446 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 H3BMH7 237 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 RAMP1O60894 148 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 TBL1XO60907 577 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 AKAP3O75969 853 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 STK17BO94768 372 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 RFC2P35250 354 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 STARP49675 285 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 SCARB2Q14108 478 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 LRRC36Q1X8D7 754 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms