RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GPN3Q9UHW5 284 aaPredicted RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 PADI2Q9Y2J8 665 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 PEX1O43933 1283 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 STX11O75558 287 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 SEC24DO94855 1032 aaPredicted RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 ALPPP05187 535 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 PABPC4LP0CB38 370 aaKnown RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 PRKACGP22612 351 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 NCF4Q15080 339 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 OTUD3Q5T2D3 398 aaPredicted RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 PRAMEF8Q5VWM4 474 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 PRAMEF7Q5VXH5 474 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 OR2T5Q6IEZ7 315 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 PIWIL3Q7Z3Z3 882 aaKnown RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 OR1N1Q8NGS0 311 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 OR2T29Q8NH02 315 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 OR52P1PQ8NH57 321 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 METTL21AQ8WXB1 218 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 GEMIN6Q8WXD5 167 aaKnown RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 ARSGQ96EG1 525 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 GAL3ST4Q96RP7 486 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 SPRY4Q9C004 299 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 NXF5Q9H1B4 397 aaKnown RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 MTHFD2LQ9H903 347 aaPredicted RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 PTRH2Q9Y3E5 179 aaKnown RBP18.62■□□□□ 0.57
CLN3-250ENST00000636839 TESMINQ9Y4I5 508 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 PCDHGB3Q9Y5G1 929 aa18.62■□□□□ 0.57
CLN3-250ENST00000636839 C7orf72A4D263 438 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 PROB1E7EW31 1015 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 DYRK3O43781 588 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 RPS18P62269 152 aaKnown RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 C16orf47Q6ZP98 133 aaPredicted RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 TSPYL5Q86VY4 417 aaPredicted RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 CARM1Q86X55 608 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 NFAM1Q8NET5 270 aaPredicted RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 DNAJC9Q8WXX5 260 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 PROX1Q92786 737 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 POP5Q969H6 163 aaKnown RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 ADIPOR1Q96A54 375 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 ZNF354BQ96LW1 612 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 ZNF184Q99676 751 aaPredicted RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 CALML5Q9NZT1 146 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 PRODH2Q9UF12 536 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 ZNF223Q9UK11 482 aaPredicted RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 BAG5Q9UL15 447 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 C15orf41Q9Y2V0 281 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 LRRC42Q9Y546 428 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 FFAR1O14842 300 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 BRINP1O60477 761 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 BCAS1O75363 584 aaPredicted RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 HOXC5Q00444 222 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 DESI1Q6ICB0 168 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 C6orf15Q6UXA7 325 aaPredicted RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 PRR22Q8IZ63 422 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 BCORP1Q8N888 145 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 OR52J3Q8NH60 311 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 SLC46A1Q96NT5 459 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 ZNF300Q96RE9 604 aaPredicted RBP18.61■□□□□ 0.57
CLN3-250ENST00000636839 DDA1Q9BW61 102 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 WDR54Q9H977 334 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 OR10H1Q9Y4A9 318 aa18.61■□□□□ 0.57
CLN3-250ENST00000636839 CELSR3Q9NYQ7 3312 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 PTPRZ1P23471 2315 aaPredicted RBP18.6■□□□□ 0.57
CLN3-250ENST00000636839 AGAP5A6NIR3 686 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 EI24O14681 340 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 TM4SF5O14894 197 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 DLGAP3O95886 979 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 TRHRP34981 398 aaPredicted RBP18.6■□□□□ 0.57
CLN3-250ENST00000636839 DCTP40126 519 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 GANABQ14697 944 aaKnown RBP18.6■□□□□ 0.57
CLN3-250ENST00000636839 EBPQ15125 230 aaKnown RBP18.6■□□□□ 0.57
CLN3-250ENST00000636839 PAPD4Q6PIY7 484 aaKnown RBP18.6■□□□□ 0.57
CLN3-250ENST00000636839 TMEM205Q6UW68 189 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 CPEB2Q7Z5Q1 589 aaKnown RBP18.6■□□□□ 0.57
CLN3-250ENST00000636839 ZNF619Q8N2I2 560 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 OR6T1Q8NGN1 323 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 EFHD2Q96C19 240 aaPredicted RBP18.6■□□□□ 0.57
CLN3-250ENST00000636839 BTBD9Q96Q07 612 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 SAP130Q9H0E3 1048 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 Q9N2J8 555 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 FLRT3Q9NZU0 649 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 PADI1Q9ULC6 663 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 CBLCQ9ULV8 474 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 FAM186AA6NE01 2351 aa18.6■□□□□ 0.57
CLN3-250ENST00000636839 SDK2Q58EX2 2172 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 C9J4A7 227 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 UGT2B17O75795 530 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 TNFSF15O95150 251 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 LGI1O95970 557 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 RRM2P31350 389 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 PIGAP37287 484 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 TCTN3Q6NUS6 607 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 DEF8Q6ZN54 512 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 ZNF836Q6ZNA1 936 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 STK32CQ86UX6 486 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 APCDD1LQ8NCL9 501 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 WDR36Q8NI36 951 aaKnown RBP18.59■□□□□ 0.57
CLN3-250ENST00000636839 SMURF2Q9HAU4 748 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 CTPS2Q9NRF8 586 aa18.59■□□□□ 0.57
CLN3-250ENST00000636839 ZNF443Q9Y2A4 671 aaPredicted RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms