RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 YIPF6Q96EC8 236 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 Q96MT0 163 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 MCHR1Q99705 422 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 PRTFDC1Q9NRG1 225 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 ENAMQ9NRM1 1142 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 SEMA4GQ9NTN9 838 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 SOHLH2Q9NX45 425 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 HCN3Q9P1Z3 774 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 SIT1Q9Y3P8 196 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 RNF215Q9Y6U7 377 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 ABCA7Q8IZY2 2146 aa20.55■□□□□ 0.88
PNKP-220ENST00000627232 A0A087WUU8 490 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 IGHV5-51A0A0C4DH38 117 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 EFCAB10A6NFE3 127 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 H3BN98 237 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 CLDN4O14493 209 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 KIAA0513O60268 411 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 ALDH4A1P30038 563 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 FNTBP49356 437 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 PPM1FP49593 454 aaPredicted RBP20.54■□□□□ 0.88
PNKP-220ENST00000627232 NFATC3Q12968 1075 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 DECR1Q16698 335 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 CCDC81Q6ZN84 652 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 PLEKHM3Q6ZWE6 761 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 GUCD1Q96NT3 240 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 DCUN1D5Q9BTE7 237 aa20.54■□□□□ 0.88
PNKP-220ENST00000627232 LMF2Q9BU23 707 aaKnown RBP20.54■□□□□ 0.88
PNKP-220ENST00000627232 CPSF4LA6NMK7 179 aaKnown RBP20.53■□□□□ 0.88
PNKP-220ENST00000627232 H0YIG0 161 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 FRS3O43559 492 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 HRO43593 1189 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 SOX14O95416 240 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 S1PR1P21453 382 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 RGS19P49795 217 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 STX4Q12846 297 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 ZNF155Q12901 538 aaPredicted RBP20.53■□□□□ 0.88
PNKP-220ENST00000627232 SLC13A2Q13183 592 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 GPR68Q15743 365 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 CCNJQ5T5M9 372 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 CASP12Q6UXS9 341 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 Q7L0L9 218 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 OR52R1Q8NGF1 315 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 DOK4Q8TEW6 326 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 PEX11GQ96HA9 241 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 C11orf16Q9NQ32 467 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 CTPS2Q9NRF8 586 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 LRIT1Q9P2V4 623 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 C19orf67A6NJJ6 358 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 NUDT21O43809 227 aaKnown RBP20.53■□□□□ 0.88
PNKP-220ENST00000627232 BRINP1O60477 761 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 GABARAPO95166 117 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 PIPP12273 146 aaPredicted RBP20.53■□□□□ 0.88
PNKP-220ENST00000627232 NID1P14543 1247 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 PSMB9P28065 219 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 GABRA3P34903 492 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 TRHRP34981 398 aaPredicted RBP20.53■□□□□ 0.88
PNKP-220ENST00000627232 BIKQ13323 160 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 GRM7Q14831 915 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 MAMSTRQ6ZN01 415 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 DGAT2L6Q6ZPD8 337 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 STX19Q8N4C7 294 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 OR8J1Q8NGP2 316 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 C9orf43Q8TAL5 461 aaPredicted RBP20.53■□□□□ 0.88
PNKP-220ENST00000627232 ACOT11Q8WXI4 607 aaPredicted RBP20.53■□□□□ 0.88
PNKP-220ENST00000627232 PIK3R3Q92569 461 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 RBM18Q96H35 190 aaKnown RBP20.53■□□□□ 0.88
PNKP-220ENST00000627232 ZNF578Q96N58 590 aaPredicted RBP20.53■□□□□ 0.88
PNKP-220ENST00000627232 IRAK4Q9NWZ3 460 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 SLC6A14Q9UN76 642 aa20.53■□□□□ 0.88
PNKP-220ENST00000627232 SPAG17Q6Q759 2223 aa20.52■□□□□ 0.88
PNKP-220ENST00000627232 SPTBN5Q9NRC6 3674 aaKnown RBP20.52■□□□□ 0.88
PNKP-220ENST00000627232 M0R129 80 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 NUDT6P53370 316 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 HSD17B7P56937 341 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 TSPAN31Q12999 210 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 COL9A2Q14055 689 aaPredicted RBP20.52■□□□□ 0.87
PNKP-220ENST00000627232 IRF3Q14653 427 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 ZNHIT3Q15649 155 aaPredicted RBP20.52■□□□□ 0.87
PNKP-220ENST00000627232 ZNF730Q6ZMV8 503 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 RANBP3LQ86VV4 465 aaPredicted RBP20.52■□□□□ 0.87
PNKP-220ENST00000627232 PIGXQ8TBF5 258 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 RIT1Q92963 219 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 CRELD1Q96HD1 420 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 AHCYL2Q96HN2 611 aaKnown RBP20.52■□□□□ 0.87
PNKP-220ENST00000627232 PELOQ9BRX2 385 aaKnown RBP20.52■□□□□ 0.87
PNKP-220ENST00000627232 PRR14Q9BWN1 585 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 ALOXE3Q9BYJ1 711 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 ARMC7Q9H6L4 198 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 FOLH1BQ9HBA9 442 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 SLC25A19Q9HC21 320 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 GPR83Q9NYM4 423 aa20.52■□□□□ 0.87
PNKP-220ENST00000627232 IGHV1OR21-1A0A087WYE8 117 aa20.51■□□□□ 0.87
PNKP-220ENST00000627232 TGFBR3LH3BV60 316 aa20.51■□□□□ 0.87
PNKP-220ENST00000627232 ZNF749O43361 778 aa20.51■□□□□ 0.87
PNKP-220ENST00000627232 BCAS1O75363 584 aaPredicted RBP20.51■□□□□ 0.87
PNKP-220ENST00000627232 DCNP07585 359 aaKnown RBP20.51■□□□□ 0.87
PNKP-220ENST00000627232 IGFBP1P08833 259 aaPredicted RBP20.51■□□□□ 0.87
PNKP-220ENST00000627232 TNNI3P19429 210 aa20.51■□□□□ 0.87
PNKP-220ENST00000627232 GALNSP34059 522 aa20.51■□□□□ 0.87
PNKP-220ENST00000627232 SLC15A1P46059 708 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms