RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 FAIM2Q9BWQ8 316 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 DPH5Q9H2P9 285 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 ELOVL6Q9H5J4 265 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 UTS2RQ9UKP6 389 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 OR10H1Q9Y4A9 318 aa13.18□□□□□ -0.3
PNKP-218ENST00000625299 TNPO3Q9Y5L0 923 aaKnown RBP13.18□□□□□ -0.3
PNKP-218ENST00000625299 PCNX3Q9H6A9 2034 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 CLOCKO15516 846 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 BCAS2O75934 225 aaPredicted RBP13.17□□□□□ -0.3
PNKP-218ENST00000625299 EIF1AXP47813 144 aaKnown RBP13.17□□□□□ -0.3
PNKP-218ENST00000625299 SLC6A8P48029 635 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 PNLIPRP2P54317 469 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 GUSBP1Q15486 140 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 ETFDHQ16134 617 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 ZNF628Q5EBL2 1059 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 STAC2Q6ZMT1 411 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 PTGR2Q8N8N7 351 aaPredicted RBP13.17□□□□□ -0.3
PNKP-218ENST00000625299 OR9A2Q8NGT5 310 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 OR6K3Q8NGY3 331 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 RAB3IL1Q8TBN0 382 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 TM4SF18Q96CE8 201 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 MRRFQ96E11 262 aaKnown RBP13.17□□□□□ -0.3
PNKP-218ENST00000625299 PHF21BQ96EK2 531 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 VSTM2LQ96N03 204 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 TMEM204Q9BSN7 226 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 PTGES2Q9H7Z7 377 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 FOLH1BQ9HBA9 442 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 FARSBQ9NSD9 589 aaKnown RBP13.17□□□□□ -0.3
PNKP-218ENST00000625299 SENP1Q9P0U3 644 aa13.17□□□□□ -0.3
PNKP-218ENST00000625299 SHISA8B8ZZ34 492 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 EIF1AYO14602 144 aaKnown RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 C2P06681 752 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 SOD3P08294 240 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 MRPS22P82650 360 aaKnown RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 GALNT1Q10472 559 aaPredicted RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 FAPQ12884 760 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 ZNF155Q12901 538 aaPredicted RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 CALCOCO2Q13137 446 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 GANABQ14697 944 aaKnown RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 ACAP2Q15057 778 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 CTU2Q2VPK5 515 aaKnown RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 LGSNQ5TDP6 509 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 FAM219BQ5XKK7 198 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 KLC3Q6P597 504 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 METTL25Q8N6Q8 603 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 UHMK1Q8TAS1 419 aaKnown RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 TRPC4APQ8TEL6 797 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 ZNF681Q96N22 645 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 NSUN5Q96P11 429 aaKnown RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 TACO1Q9BSH4 297 aaKnown RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 NTMT1Q9BV86 223 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 SLCO5A1Q9H2Y9 848 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 FANCFQ9NPI8 374 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 FLRT3Q9NZU0 649 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 RNF115Q9Y4L5 304 aa13.16□□□□□ -0.3
PNKP-218ENST00000625299 MAGED1Q9Y5V3 778 aaPredicted RBP13.16□□□□□ -0.3
PNKP-218ENST00000625299 A8MV72 311 aaPredicted RBP13.15□□□□□ -0.3
PNKP-218ENST00000625299 LINC01387J3KSC0 135 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 EIF3HO15372 352 aaKnown RBP eCLIP13.15□□□□□ -0.3
PNKP-218ENST00000625299 ADAM11O75078 769 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 RFX3P48380 749 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 TRAF3Q13114 568 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 MROH9Q5TGP6 573 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 CYS1Q717R9 158 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 STK32CQ86UX6 486 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 CCDC25Q86WR0 208 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 C1orf52Q8N6N3 182 aaKnown RBP13.15□□□□□ -0.3
PNKP-218ENST00000625299 ZNF675Q8TD23 568 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 FBF1Q8TES7 1133 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 RNF138Q8WVD3 245 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 SELENOMQ8WWX9 145 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 NEUROG1Q92886 237 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 FBXW5Q969U6 566 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 EXOSC8Q96B26 276 aaKnown RBP13.15□□□□□ -0.3
PNKP-218ENST00000625299 MTBPQ96DY7 904 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 C1GALT1C1Q96EU7 318 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 HBEGFQ99075 208 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 C12orf49Q9H741 205 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 ZBTB26Q9HCK0 441 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 SDHAF3Q9NRP4 125 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 PLSCR4Q9NRQ2 329 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 LIPT1Q9Y234 373 aa13.15□□□□□ -0.3
PNKP-218ENST00000625299 A0A096LPK6 155 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 A0A1W2PP18 115 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 CCDC188H7C350 402 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 OVOL3O00110 214 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 HAX1O00165 279 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 KLHL2O95198 593 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 F12P00748 615 aaPredicted RBP13.14□□□□□ -0.31
PNKP-218ENST00000625299 PDYNP01213 254 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 GSTA2P09210 222 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 STX2P32856 288 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 PSPHP78330 225 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 ZNF844Q08AG5 666 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 UAP1Q16222 522 aaPredicted RBP13.14□□□□□ -0.31
PNKP-218ENST00000625299 BEND4Q6ZU67 534 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 RPS27LQ71UM5 84 aaKnown RBP13.14□□□□□ -0.31
PNKP-218ENST00000625299 MILR1Q7Z6M3 343 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 CREG2Q8IUH2 290 aa13.14□□□□□ -0.31
PNKP-218ENST00000625299 ZNF619Q8N2I2 560 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms