RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 ZNF559Q9BR84 538 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 SEMA4GQ9NTN9 838 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 ACER3Q9NUN7 267 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 PISDQ9UG56 409 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 CARD8Q9Y2G2 431 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 LOC100506127A0A0U1RQW1 187 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 TLCD2A6NGC4 264 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 KCNJ13O60928 360 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 INMTO95050 263 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 TNFAIP8O95379 198 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 HOXB9P17482 250 aaPredicted RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 MPLP40238 635 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 EMDP50402 254 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 EEF1A2Q05639 463 aaKnown RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 PUS10Q3MIT2 529 aaKnown RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 CRB2Q5IJ48 1285 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 CLDN23Q96B33 292 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 ZNF775Q96BV0 537 aaPredicted RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 TCTN2Q96GX1 697 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 RBM4BQ9BQ04 359 aaKnown RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 RBM4Q9BWF3 364 aaKnown RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 POLR2J3Q9H1A7 115 aaKnown RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 NXF5Q9H1B4 397 aaKnown RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 PHF11Q9UIL8 331 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 CSNK1G3Q9Y6M4 447 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 MUC22E2RYF6 1773 aaPredicted RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 C4orf47A7E2U8 309 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 EPPINO95925 133 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 H1F0P07305 194 aaKnown RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 EPHA8P29322 1005 aaPredicted RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 KHKP50053 298 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 RPS7P62081 194 aaKnown RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 NPRL3Q12980 569 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 PMS2P3Q13401 168 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 GRM7Q14831 915 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 DCST2Q5T1A1 773 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 PRAMEF20Q5VT98 475 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 LRRC17Q8N6Y2 441 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 SLC25A36Q96CQ1 311 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 FCRL1Q96LA6 429 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 SDF2Q99470 211 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 ACTRT3Q9BYD9 372 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 ZNF304Q9HCX3 659 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 ZNF346Q9UL40 294 aaKnown RBP9.79□□□□□ -0.84
VPS11-208ENST00000621676 VDAC3Q9Y277 283 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 PCDHGB3Q9Y5G1 929 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 PCDHGA2Q9Y5H1 932 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 MPDZO75970 2070 aa9.79□□□□□ -0.84
VPS11-208ENST00000621676 LNP1A1A4G5 178 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 AP3D1O14617 1153 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 IMPA2O14732 288 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 POLR1CO15160 346 aaPredicted RBP9.78□□□□□ -0.84
VPS11-208ENST00000621676 CCNB2O95067 398 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 IGKV1D-16P01601 117 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 LCKP06239 509 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PEPDP12955 493 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 TEAD1P28347 426 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PCSK6P29122 969 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 SOX18P35713 384 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 FASLGP48023 281 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 NDUFA9Q16795 377 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 IKBIPQ70UQ0 350 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PRICKLE2Q7Z3G6 844 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 SPRED1Q7Z699 444 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 THAP5Q7Z6K1 395 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 CCDC71Q8IV32 467 aaPredicted RBP9.78□□□□□ -0.84
VPS11-208ENST00000621676 STT3BQ8TCJ2 826 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 GFM1Q96RP9 751 aaKnown RBP9.78□□□□□ -0.84
VPS11-208ENST00000621676 OR51V1Q9H2C8 321 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 TPK1Q9H3S4 243 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 GALNT9Q9HCQ5 603 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 TNFRSF10DQ9UBN6 386 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PILRBQ9UKJ0 227 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 RAB26Q9ULW5 256 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 N6AMT1Q9Y5N5 214 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PCNX3Q9H6A9 2034 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 TMEM265A0A087WTH1 108 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 GTPBP1O00178 669 aaKnown RBP9.78□□□□□ -0.84
VPS11-208ENST00000621676 BMP10O95393 424 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 CPNE6O95741 557 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 CBX7O95931 251 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 RECKO95980 971 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 FPR1P21462 350 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 FBLP22087 321 aaKnown RBP9.78□□□□□ -0.84
VPS11-208ENST00000621676 PPIBP23284 216 aaKnown RBP9.78□□□□□ -0.84
VPS11-208ENST00000621676 RFC3P40938 356 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 HLCSP50747 726 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 FADDQ13158 208 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 SMU1Q2TAY7 513 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 ENTPD8Q5MY95 495 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PRR14LQ5THK1 2151 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 HLA-DQA1Q5Y7H0 255 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PAQR6Q6TCH4 344 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PTCHD4Q6ZW05 846 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 GEMIN6Q8WXD5 167 aaKnown RBP9.78□□□□□ -0.84
VPS11-208ENST00000621676 SMPDL3BQ92485 455 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 HTRA1Q92743 480 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PIP5K1AQ99755 562 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 PLA2G12AQ9BZM1 189 aa9.78□□□□□ -0.84
VPS11-208ENST00000621676 ENKD1Q9H0I2 346 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms