RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ROPN1LQ96C74 230 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 SLC39A3Q9BRY0 314 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 RAD21L1Q9H4I0 556 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 EFCAB1Q9HAE3 211 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 PCDHGB3Q9Y5G1 929 aa18.14■□□□□ 0.49
UPF3A-211ENST00000618700 OR6C70A6NIJ9 312 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 AIM2O14862 343 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 DPM1O60762 260 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 UGT2B11O75310 529 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 IL33O95760 270 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 AK1P00568 194 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 BMP2P12643 396 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 ETFAP13804 333 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 GPX2P18283 190 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 ANXA11P50995 505 aaKnown RBP18.13■□□□□ 0.49
UPF3A-211ENST00000618700 FBXW4P57775 412 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 FUT5Q11128 374 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 SELPLGQ14242 412 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 DECR1Q16698 335 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.13■□□□□ 0.49
UPF3A-211ENST00000618700 DCST2Q5T1A1 773 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 RTL4Q6ZR62 310 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 C10orf111Q8N326 155 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 GOLM1Q8NBJ4 401 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 CATSPER1Q8NEC5 780 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 OR10G3Q8NGC4 313 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 DIO2Q92813 273 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 RAB8BQ92930 207 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 SGCZQ96LD1 299 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 COL21A1Q96P44 957 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 GPATCH1Q9BRR8 931 aaKnown RBP18.13■□□□□ 0.49
UPF3A-211ENST00000618700 TRIM8Q9BZR9 551 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 SLC25A18Q9H1K4 315 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 ZNF71Q9NQZ8 489 aaPredicted RBP18.13■□□□□ 0.49
UPF3A-211ENST00000618700 CORO2BQ9UQ03 480 aa18.13■□□□□ 0.49
UPF3A-211ENST00000618700 CHCHD2Q9Y6H1 151 aaPredicted RBP18.13■□□□□ 0.49
UPF3A-211ENST00000618700 TNFRSF21O75509 655 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 REM1O75628 298 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 CBX6O95503 412 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 IL12BP29460 328 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 KRT20P35900 424 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 CRATP43155 626 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 CPA2P48052 419 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 NUDT2P50583 147 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 PNLIPRP2P54317 469 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 MTPNP58546 118 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 EFR3AQ14156 821 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 CCNJQ5T5M9 372 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 SPINK14Q6IE38 97 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 NANOGP8Q6NSW7 305 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 Q6ZS92 163 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 MDGA2Q7Z553 956 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 ZAR1Q86SH2 424 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 OR8J3Q8NGG0 315 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 PAQR8Q8TEZ7 354 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 RNF138Q8WVD3 245 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 EFHD2Q96C19 240 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-211ENST00000618700 BBC3Q96PG8 261 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-211ENST00000618700 ADOQ96SZ5 270 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 SECISBP2Q96T21 854 aaKnown RBP18.12■□□□□ 0.49
UPF3A-211ENST00000618700 NANOGQ9H9S0 305 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 EXD2Q9NVH0 621 aa18.12■□□□□ 0.49
UPF3A-211ENST00000618700 MRTO4Q9UKD2 239 aaKnown RBP18.12■□□□□ 0.49
UPF3A-211ENST00000618700 PRAMEF27A3QJZ7 478 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 EVPLLA8MZ36 301 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 SLC25A12O75746 678 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 SLC6A2P23975 617 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 PSMD4P55036 377 aaKnown RBP18.11■□□□□ 0.49
UPF3A-211ENST00000618700 DSTNP60981 165 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 LY6DQ14210 128 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 ARHGAP11BQ3KRB8 267 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 SOWAHCQ53LP3 525 aaPredicted RBP18.11■□□□□ 0.49
UPF3A-211ENST00000618700 RABL3Q5HYI8 236 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 ATAD3BQ5T9A4 648 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 DESI1Q6ICB0 168 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 FIGNL1Q6PIW4 674 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 NUP54Q7Z3B4 507 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 SPPL2AQ8TCT8 520 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 XAGE5Q8WWM1 108 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 SCMH1Q96GD3 660 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 ZNF350Q9GZX5 532 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.11■□□□□ 0.49
UPF3A-211ENST00000618700 KAT8Q9H7Z6 458 aaKnown RBP18.11■□□□□ 0.49
UPF3A-211ENST00000618700 FBXO34Q9NWN3 711 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 PCDHGB6Q9Y5F9 930 aa18.11■□□□□ 0.49
UPF3A-211ENST00000618700 TRAV17A0A0B4J275 112 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 ATXN7O15265 892 aaPredicted RBP18.1■□□□□ 0.49
UPF3A-211ENST00000618700 NME2P1O60361 137 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 ZIC2O95409 532 aaPredicted RBP18.1■□□□□ 0.49
UPF3A-211ENST00000618700 GUSBP08236 651 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 T-ENOLP0DO92 83 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 CCL3P10147 92 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 CYP4B1P13584 511 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 NME2P22392 152 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 LCN1P31025 176 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 AP1ARQ63HQ0 302 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 SLC6A19Q695T7 634 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 TMEM81Q6P7N7 255 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 C16orf62Q7Z3J2 963 aa18.1■□□□□ 0.49
UPF3A-211ENST00000618700 GALNT10Q86SR1 603 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms