RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SSX1Q16384 188 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 PTCHD4Q6ZW05 846 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 GDF15Q99988 308 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 SRRQ9GZT4 340 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 GABARAPL1Q9H0R8 117 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 RSPH9Q9H1X1 276 aaPredicted RBP13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 GLIPR2Q9H4G4 154 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 LMAN1LQ9HAT1 526 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 CACNA1GO43497 2377 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 OR6C74A6NCV1 312 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 LEUTXA8MZ59 168 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 ZNF250P15622 560 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 ERP29P30040 261 aaKnown RBP13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 TEAD4Q15561 434 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 FLYWCH1Q4VC44 716 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 REEP3Q6NUK4 255 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 LCTLQ6UWM7 567 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 TMEM92Q6UXU6 159 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 COX14Q96I36 57 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 EVA1BQ9NVM1 165 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 ICKQ9UPZ9 632 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 HCN4Q9Y3Q4 1203 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 CMAHPQ9Y471 501 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 CACNA1HO95180 2353 aa13.6□□□□□ -0.23
SHROOM1-208ENST00000617339 A0A1W2PQL4 384 aaPredicted RBP13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 SERPINI2O75830 405 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 OR7A10O76100 309 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 PRPH2P23942 346 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 MAGEA2P43356 314 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 RORCP51449 518 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 NNATQ16517 81 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 UNC5DQ6UXZ4 953 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 UBE3DQ7Z6J8 389 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 RAB7BQ96AH8 199 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 MAPKAP1Q9BPZ7 522 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 GALNT9Q9HCQ5 603 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 LHX9Q9NQ69 397 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 TVP23BQ9NYZ1 205 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 KIAA1671Q9BY89 1806 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 A0A1W2PR48 441 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 FOXE1O00358 373 aaPredicted RBP13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 CSF3P09919 207 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 SDHBP21912 280 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 LIM2P55344 173 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 PUM1Q14671 1186 aaKnown RBP eCLIP13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 POU4F3Q15319 338 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 TIMM50Q3ZCQ8 353 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 FBXO43Q4G163 708 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 LIPKQ5VXJ0 399 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 ADAMTSL4Q6UY14 1074 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 B3GLCTQ6Y288 498 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 SHFQ7M4L6 423 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 OXR1Q8N573 874 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 DNAJB8Q8NHS0 232 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 TOE1Q96GM8 510 aaKnown RBP13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 ZNF224Q9NZL3 707 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 COMMD3Q9UBI1 195 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 AP3M1Q9Y2T2 418 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 GPR52Q9Y2T5 361 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 LRIT2A6NDA9 550 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 GNB5O14775 395 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 INPP1P49441 399 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 MAN2A2P49641 1150 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 LPAL2Q16609 132 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 ESCO2Q56NI9 601 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 PRSS41Q7RTY9 318 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 OR5T3Q8NGG3 340 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 SETD6Q8TBK2 473 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 SETD7Q8WTS6 366 aaKnown RBP13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 ZBED6CLQ96FA7 236 aaPredicted RBP13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 OR2M4Q96R27 311 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 TREX2Q9BQ50 279 aaPredicted RBP13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 EPHX3Q9H6B9 360 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 NMNAT1Q9HAN9 279 aaPredicted RBP13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 MYNNQ9NPC7 610 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 COLEC10Q9Y6Z7 277 aa13.59□□□□□ -0.23
SHROOM1-208ENST00000617339 PRSS38A1L453 326 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 CPSF4LA6NMK7 179 aaKnown RBP13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 SEMA4FO95754 770 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 HOXB9P17482 250 aaPredicted RBP13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 CNR2P34972 360 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 VEZF1Q14119 521 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 PAQR6Q6TCH4 344 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 KRT73Q86Y46 540 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 SLC35G5Q96KT7 338 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 PITX2Q99697 317 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 PPIL3Q9H2H8 161 aaKnown RBP13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 SLC6A20Q9NP91 592 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 TMEM74BQ9NUR3 256 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 TMEM45AQ9NWC5 275 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 ATP6V1HQ9UI12 483 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 SLCO1B1Q9Y6L6 691 aa13.58□□□□□ -0.23
SHROOM1-208ENST00000617339 FAM240BA0A1B0GVZ2 78 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 H3BUI4 141 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 IFNA16P05015 189 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 PPIBP23284 216 aaKnown RBP13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 APEX1P27695 318 aaKnown RBP13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 PCGF2P35227 344 aa13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 KIR2DL1P43626 348 aaPredicted RBP13.58□□□□□ -0.24
SHROOM1-208ENST00000617339 GZMKP49863 264 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms