RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 NKX2-2O95096 273 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 WISP1O95388 367 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 POLR2JP52435 117 aaKnown RBP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 NRG3P56975 720 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 MRPS22P82650 360 aaKnown RBP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 SPDYE7PQ495Y7 208 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 C3P1Q6ZMU1 363 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 C6orf120Q7Z4R8 191 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 MIER2Q8N344 545 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 FBXW8Q8N3Y1 598 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 SLC15A4Q8N697 577 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 ARFGAP2Q8N6H7 521 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 TMEM251Q8N6I4 163 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 C7orf57Q8NEG2 295 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 OR4C3Q8NH37 302 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 NTNG2Q96CW9 530 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 CHMP6Q96FZ7 201 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 SGCZQ96LD1 299 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 PRPF18Q99633 342 aaKnown RBP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 DOHHQ9BU89 302 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 FAM107BQ9H098 131 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 CFL2Q9Y281 166 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 ARHGAP21Q5T5U3 1957 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 NCOA6Q14686 2063 aaPredicted RBP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 ACOX3O15254 700 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 SCO2O43819 266 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 CDC40O60508 579 aaKnown RBP eCLIP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 GLSO94925 669 aaPredicted RBP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 KCNK2O95069 426 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 P04436 131 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 ENDOUP21128 410 aaKnown RBP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 CNR1P21554 472 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 RPL3P39023 403 aaKnown RBP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 CLNS1AP54105 237 aaKnown RBP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 ALDH6A1Q02252 535 aaKnown RBP12.34□□□□□ -0.43
LINC00540-202ENST00000616974 STX5Q13190 355 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 GSTA3Q16772 222 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 SPPL2CQ8IUH8 684 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 MSRB3Q8IXL7 192 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 WDSUB1Q8N9V3 476 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 GATSQ8NAP1 163 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 PRR7Q8TB68 274 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 CCDC115Q96NT0 180 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 COL21A1Q96P44 957 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 OR7D2Q96RA2 312 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 NPAS1Q99742 590 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 CCDC28BQ9BUN5 200 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 ZIM2Q9NZV7 527 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 FBXL2Q9UKC9 423 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 MAPRE3Q9UPY8 281 aa12.34□□□□□ -0.43
LINC00540-202ENST00000616974 PHF3Q92576 2039 aaKnown RBP12.33□□□□□ -0.43
LINC00540-202ENST00000616974 ANKUB1A6NFN9 424 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 TRIM3O75382 744 aaPredicted RBP12.33□□□□□ -0.44
LINC00540-202ENST00000616974 BCAS2O75934 225 aaPredicted RBP12.33□□□□□ -0.44
LINC00540-202ENST00000616974 MVDP53602 400 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 GAS1P54826 345 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 AGKQ53H12 422 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 RETREG3Q86VR2 466 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 RNF130Q86XS8 419 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 CDRT4Q8N9R6 151 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 GTF2H4Q92759 462 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 ZNF524Q96C55 264 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 PANX1Q96RD7 426 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 SLC35A5Q9BS91 424 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 IKZF5Q9H5V7 419 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 ZNF703Q9H7S9 590 aaPredicted RBP12.33□□□□□ -0.44
LINC00540-202ENST00000616974 C3orf14Q9HBI5 128 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 SLC25A37Q9NYZ2 338 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 KCNE5Q9UJ90 142 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 TINAGQ9UJW2 476 aa12.33□□□□□ -0.44
LINC00540-202ENST00000616974 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.33□□□□□ -0.44
LINC00540-202ENST00000616974 CCDC154A6NI56 674 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 OR6C70A6NIJ9 312 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 KLRC4-KLRK1H3BQV0 150 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 TFECO14948 347 aaPredicted RBP12.32□□□□□ -0.44
LINC00540-202ENST00000616974 FCMRO60667 390 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 OR12D1P0DN82 309 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 HOXB9P17482 250 aaPredicted RBP12.32□□□□□ -0.44
LINC00540-202ENST00000616974 DCAF7P61962 342 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 PPIAP62937 165 aaKnown RBP12.32□□□□□ -0.44
LINC00540-202ENST00000616974 PRR5P85299 388 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 RCAN2Q14206 197 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 GRAMD1BQ3KR37 738 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 BLOC1S3Q6QNY0 202 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 ZNF621Q6ZSS3 439 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 MARCH3Q86UD3 253 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 RPRMLQ8N4K4 120 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 C10orf82Q8WW14 230 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 ZG16BQ96DA0 208 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 FAM173AQ9BQD7 235 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 OR51I1Q9H343 314 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 METTL7AQ9H8H3 244 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 NEUROD4Q9HD90 331 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 Q9N2J8 555 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 KLRF1Q9NZS2 232 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 ARMCX1Q9P291 453 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 MAP1AP78559 2803 aaPredicted RBP12.32□□□□□ -0.44
LINC00540-202ENST00000616974 HRNRQ86YZ3 2850 aaPredicted RBP12.32□□□□□ -0.44
LINC00540-202ENST00000616974 A0A1B0GTH9 108 aa12.32□□□□□ -0.44
LINC00540-202ENST00000616974 KDM4EB2RXH2 506 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms