RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ADRA1DP25100 572 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 POU1F1P28069 291 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 GSTM2P28161 218 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 CDAP32320 146 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 NSG1P42857 185 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 KPNA2P52292 529 aaKnown RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 F2RL1P55085 397 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 ACSM2AQ08AH3 577 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 TMED1Q13445 227 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 OR1C1Q15619 314 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 GXYLT1Q4G148 440 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 C6orf136Q5SQH8 315 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 FAM120AOSQ5T036 256 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 SERTAD4-AS1Q5TG53 156 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 ACSM2BQ68CK6 577 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 TXNRD3NBQ6F5E7 133 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 SPINK14Q6IE38 97 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 RHBDD2Q6NTF9 364 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 CLEC17AQ6ZS10 378 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 RGS9BPQ6ZS82 235 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 STXBP4Q6ZWJ1 553 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 NELFCDQ8IXH7 590 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 ZNF683Q8IZ20 524 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 NECAB1Q8N987 351 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 NHLRC2Q8NBF2 726 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 MDS2Q8NDY4 140 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 SETD9Q8NE22 299 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 SRFBP1Q8NEF9 429 aaKnown RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 TAS1R2Q8TE23 839 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 CTNNBL1Q8WYA6 563 aaPredicted RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 NEUROG1Q92886 237 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 ELMOD3Q96FG2 381 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 EEF2KMTQ96G04 330 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 SCMH1Q96GD3 660 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 ZNF641Q96N77 438 aaPredicted RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 FCRL5Q96RD9 977 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 INTS14Q96SY0 518 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 TXN2Q99757 166 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 TRIM62Q9BVG3 475 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 HDHD5Q9BXW7 423 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 RBM38Q9H0Z9 239 aaKnown RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 SYTL2Q9HCH5 934 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 RANGRFQ9HD47 186 aaPredicted RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 PAPOLBQ9NRJ5 636 aaKnown RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 PNPLA3Q9NST1 481 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 PANK4Q9NVE7 773 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 HRASLS2Q9NWW9 162 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 C6orf203Q9P0P8 240 aaPredicted RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 B4GALT7Q9UBV7 327 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 TRIM10Q9UDY6 481 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 PLAGL1Q9UM63 463 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 CMAHPQ9Y471 501 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 FAM215AQ9Y5M1 114 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 SACSQ9NZJ4 4579 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 CMYA5Q8N3K9 4069 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 TENM3Q9P273 2699 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 MED12Q93074 2177 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 SLC22A23A1A5C7 686 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 HYKKA2RU49 373 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 GSAPA4D1B5 854 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 A8MUI8 341 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 FAM157AC9JC47 383 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 NPIPA2E9PIF3 369 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 NPIPA3F8WFD2 350 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 UBXN8O00124 270 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 CASKO14936 926 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 PIN1P1O15428 100 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 OR2B3O76000 313 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 IFNB1P01574 187 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 UROSP10746 265 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 COX6A1P12074 109 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 PAX1P15863 534 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 HOXB9P17482 250 aaPredicted RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 MATN1P21941 496 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 ACHEP22303 614 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 PBLDP30039 288 aaPredicted RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 RFC3P40938 356 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 SKIV2L2P42285 1042 aaKnown RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 HNMTP50135 292 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 EFNA3P52797 238 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 NAGLUP54802 743 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 YWHAZP63104 245 aaKnown RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 TXNL4AP83876 142 aaKnown RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 EEF1A2Q05639 463 aaKnown RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 FASTKQ14296 549 aaKnown RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 RNPS1Q15287 305 aaKnown RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 SNAPC1Q16533 368 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 HIST2H2ACQ16777 129 aaPredicted RBP3.92□□□□□ -1.78
LINC00540-201ENST00000611481 TMEM249Q2WGJ8 235 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 CBWD6Q4V339 395 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 CBWD3Q5JTY5 395 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 RTL6Q6ICC9 239 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 AADACL2Q6P093 401 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 ARHGAP11AQ6P4F7 1023 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 LCLAT1Q6UWP7 414 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 IL20RBQ6UXL0 311 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 PPP1R21Q6ZMI0 780 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 RFLNAQ6ZTI6 216 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 NDUFAF7Q7L592 441 aa3.92□□□□□ -1.78
LINC00540-201ENST00000611481 PRSS45Q7RTY3 260 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms