RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 GABRA4P48169 554 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 TEKQ02763 1124 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 MAP4K2Q12851 820 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 TBCEQ15813 527 aaPredicted RBP13.48□□□□□ -0.25
VRK3-217ENST00000599538 DCST2Q5T1A1 773 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 C11orf74Q86VG3 221 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 GKN2Q86XP6 184 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 TCEANCQ8N8B7 351 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 PHOX2BQ99453 314 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 MCHR1Q99705 422 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 ZNF350Q9GZX5 532 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 CHRDQ9H2X0 955 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 TVP23BQ9NYZ1 205 aa13.48□□□□□ -0.25
VRK3-217ENST00000599538 MRPS17Q9Y2R5 130 aaKnown RBP13.48□□□□□ -0.25
VRK3-217ENST00000599538 A0A087WV62 115 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 AGAP5A6NIR3 686 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 AQP9O43315 295 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 PRKYO43930 277 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 INHBBP09529 407 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 CCNYL3P0C7X3 344 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 GKN3PP0CG01 181 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 MAP3K8P41279 467 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 ZNF136P52737 540 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 EEF1A1P68104 462 aaKnown RBP13.47□□□□□ -0.25
VRK3-217ENST00000599538 BTG2P78543 158 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 PLAURQ03405 335 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 C17orf82Q86X59 251 aaPredicted RBP13.47□□□□□ -0.25
VRK3-217ENST00000599538 CADM4Q8NFZ8 388 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 OR52R1Q8NGF1 315 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 OR8D4Q8NGM9 314 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 FAM174AQ8TBP5 190 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 GPR151Q8TDV0 419 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 FAM46AQ96IP4 442 aaKnown RBP13.47□□□□□ -0.25
VRK3-217ENST00000599538 SH3GL3Q99963 347 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 SLC25A19Q9HC21 320 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 CLN6Q9NWW5 311 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 SEC16AO15027 2179 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 VPS13AQ96RL7 3174 aa13.47□□□□□ -0.25
VRK3-217ENST00000599538 PIP5K1CO60331 668 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 ALOX5P09917 674 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 S1PR1P21453 382 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 GABRA3P34903 492 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 GRK5P34947 590 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 SLC15A1P46059 708 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 NXPH1P58417 271 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 DMWDQ09019 674 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 DCTN2Q13561 401 aaKnown RBP13.46□□□□□ -0.25
VRK3-217ENST00000599538 IRF3Q14653 427 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 GINS1Q14691 196 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 ANKDD1AQ495B1 522 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 CD300LDQ6UXZ3 194 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 GDF7Q7Z4P5 450 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 PEX5LQ8IYB4 626 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 COX18Q8N8Q8 333 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 CDRT4Q8N9R6 151 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 ZNF675Q8TD23 568 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 TMEM255BQ8WV15 326 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 SLC38A4Q969I6 547 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 OR5M11Q96RB7 305 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 ITPAQ9BY32 194 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 CLDN16Q9Y5I7 305 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 CACNA1IQ9P0X4 2223 aa13.46□□□□□ -0.25
VRK3-217ENST00000599538 STK25O00506 426 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 AGR2O95994 175 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 DCNP07585 359 aaKnown RBP13.46□□□□□ -0.26
VRK3-217ENST00000599538 MYF5P13349 255 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 OMPP47874 163 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 RFX3P48380 749 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 GIPRP48546 466 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 SNRPGP62308 76 aaKnown RBP13.46□□□□□ -0.26
VRK3-217ENST00000599538 SLC13A2Q13183 592 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 KCNAB1Q14722 419 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 TRAM2Q15035 370 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 TIGD6Q17RP2 521 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 ZNF730Q6ZMV8 503 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 PLEKHM3Q6ZWE6 761 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 VWA5B2Q8N398 1253 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 OR4N2Q8NGD1 307 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 TCTN2Q96GX1 697 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 KLHL28Q9NXS3 571 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 WNT16Q9UBV4 365 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 DTX4Q9Y2E6 619 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 UNC13CQ8NB66 2214 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 MUC3AQ02505 3323 aa13.46□□□□□ -0.26
VRK3-217ENST00000599538 ARID1BQ8NFD5 2236 aaPredicted RBP13.45□□□□□ -0.26
VRK3-217ENST00000599538 SH3D21A4FU49 640 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 LILRA5A6NI73 299 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 AP3D1O14617 1153 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 TLX2O43763 284 aaPredicted RBP13.45□□□□□ -0.26
VRK3-217ENST00000599538 OR10H2O60403 315 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 MPZL2O60487 215 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 STX11O75558 287 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 SLC35E2P0CK97 266 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 SSTR4P31391 388 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 BMXP51813 675 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 CDK5Q00535 292 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 ALDH6A1Q02252 535 aaKnown RBP13.45□□□□□ -0.26
VRK3-217ENST00000599538 ST3GAL3Q11203 375 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 COX10Q12887 443 aa13.45□□□□□ -0.26
VRK3-217ENST00000599538 SOWAHCQ53LP3 525 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms