RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	ENPP6	Q6UWR7	440 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	GRAMD2A	Q8IUY3	354 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	DACH2	Q96NX9	599 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	KCNA7	Q96RP8	456 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	ZNF382	Q96SR6	550 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	RTN4R	Q9BZR6	473 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	PFDN4	Q9NQP4	134 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	TBK1	Q9UHD2	729 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	MCM8	Q9UJA3	840 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	ZNF180	Q9UJW8	692 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	DKKL1	Q9UK85	242 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	PACSIN3	Q9UKS6	424 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223	HEATR5A	Q86XA9	2040 aa		13.28	□□□□□ -0.28
IRF3-223	ENST00000599223		A8MXE2	369 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223		H0YC42	278 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	DRD2	P14416	443 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	TPD52	P55327	224 aa	Predicted RBP	13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	CLDN15	P56746	228 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	CSTF3	Q12996	717 aa	Known RBP	13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	ZNF678	Q5SXM1	525 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	VWA1	Q6PCB0	445 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	LARP4	Q71RC2	724 aa	Known RBP eCLIP	13.27	□□□□□ -0.29	1e-6	■■□□□ 13.6
IRF3-223	ENST00000599223	SMPDL3B	Q92485	455 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	TLCD1	Q96CP7	247 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	TMCO6	Q96DC7	493 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	C11orf24	Q96F05	449 aa	Predicted RBP	13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	TMEM216	Q9P0N5	145 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	C6orf203	Q9P0P8	240 aa	Predicted RBP	13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	PSME2	Q9UL46	239 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	EDAR	Q9UNE0	448 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	ACTL7B	Q9Y614	415 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	ROS1	P08922	2347 aa		13.27	□□□□□ -0.29
IRF3-223	ENST00000599223	DEFB108A	A8MXU0	73 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	SCO2	O43819	266 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	DLX3	O60479	287 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	ABCB7	O75027	752 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	SUPT7L	O94864	414 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	GOSR1	O95249	250 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	HSD3B1	P14060	373 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	HSD3B2	P26439	372 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	DPP4	P27487	766 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	IL12B	P29460	328 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	TIA1	P31483	386 aa	Known RBP eCLIP	13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	EVI2B	P34910	448 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	PSG6	Q00889	435 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	FAM27E3	Q08E93	113 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	ZNF155	Q12901	538 aa	Predicted RBP	13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	AAGAB	Q6PD74	315 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	GPRIN3	Q6ZVF9	776 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	SLC44A2	Q8IWA5	706 aa	Predicted RBP	13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	UBQLNL	Q8IYU4	475 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	FADS6	Q8N9I5	356 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	C16orf78	Q8WTQ4	265 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	MTBP	Q96DY7	904 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	PIGM	Q9H3S5	423 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	SLC35C2	Q9NQQ7	365 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	TIMM22	Q9Y584	194 aa		13.26	□□□□□ -0.29
IRF3-223	ENST00000599223	GNG14	A0A1W2PPG7	69 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	PLOD3	O60568	738 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	KRT6A	P02538	564 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	KRT6B	P04259	564 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	CHM	P24386	653 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	MC3R	P41968	323 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	KRT6C	P48668	564 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	GABPB1	Q06547	395 aa	Predicted RBP	13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	LTB	Q06643	244 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	STX5	Q13190	355 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	EFR3A	Q14156	821 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	ZNF474	Q6S9Z5	364 aa	Predicted RBP	13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	SCIMP	Q6UWF3	145 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	BIVM	Q86UB2	503 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	FAM9C	Q8IZT9	166 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	OR2M3	Q8NG83	312 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	OR5M1	Q8NGP8	315 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	FIG4	Q92562	907 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	ERP27	Q96DN0	273 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	STARD4	Q96DR4	205 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	C18orf12	Q96KH6	178 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	PIGQ	Q9BRB3	760 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	OPN3	Q9H1Y3	402 aa	Predicted RBP	13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	BEX4	Q9NWD9	120 aa	Predicted RBP	13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	NMRK1	Q9NWW6	199 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	KLHL28	Q9NXS3	571 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	NKIRAS1	Q9NYS0	192 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	ADAM21	Q9UKJ8	722 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	PRR14L	Q5THK1	2151 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	DSCAM	O60469	2012 aa		13.25	□□□□□ -0.29
IRF3-223	ENST00000599223	SLC22A20	A6NK97	555 aa		13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	MSTN	O14793	375 aa		13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	SMNDC1	O75940	238 aa	Known RBP eCLIP	13.24	□□□□□ -0.29	3e-6	■■■□□ 15.3
IRF3-223	ENST00000599223	SNRPA	P09012	282 aa	Known RBP	13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	HMOX2	P30519	316 aa		13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	KIR2DL2	P43627	348 aa	Predicted RBP	13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	SUCLG1	P53597	346 aa	Known RBP	13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	PNLIPRP2	P54317	469 aa		13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	FOXA1	P55317	472 aa		13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	SIRPA	P78324	504 aa		13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	NKX6-1	P78426	367 aa	Predicted RBP	13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	ACSM2A	Q08AH3	577 aa		13.24	□□□□□ -0.29
IRF3-223	ENST00000599223	SPIN4	Q56A73	249 aa		13.24	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms