RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-204	ENST00000594828	STAR	P49675	285 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	RPL38	P63173	70 aa	Known RBP	21.31	■■□□□ 1
LSM4-204	ENST00000594828	HSPB3	Q12988	150 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	ARL13A	Q5H913	290 aa	Predicted RBP	21.31	■■□□□ 1
LSM4-204	ENST00000594828	DDIAS	Q8IXT1	998 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	OR4K17	Q8NGC6	315 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	RNASE6	Q93091	150 aa	Known RBP	21.31	■■□□□ 1
LSM4-204	ENST00000594828	PPCDC	Q96CD2	204 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	ZNF764	Q96H86	408 aa	Predicted RBP	21.31	■■□□□ 1
LSM4-204	ENST00000594828	SFXN2	Q96NB2	322 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	TSSK3	Q96PN8	268 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	SH3GL2	Q99962	352 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	LMF2	Q9BU23	707 aa	Known RBP	21.31	■■□□□ 1
LSM4-204	ENST00000594828	MECR	Q9BV79	373 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	SDHAF3	Q9NRP4	125 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	BAIAP2L1	Q9UHR4	511 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	TMED5	Q9Y3A6	229 aa		21.31	■■□□□ 1
LSM4-204	ENST00000594828	TTC36	A6NLP5	189 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	LSM1	O15116	133 aa	Known RBP	21.3	■■□□□ 1
LSM4-204	ENST00000594828	FADS1	O60427	444 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	TBX19	O60806	448 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	GPC1	P35052	558 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	OPRM1	P35372	400 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	AGFG1	P52594	562 aa	Known RBP	21.3	■■□□□ 1
LSM4-204	ENST00000594828	DGKQ	P52824	942 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	PSMD4	P55036	377 aa	Known RBP	21.3	■■□□□ 1
LSM4-204	ENST00000594828	FBXL19-AS1	Q494R0	122 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	GALNTL6	Q49A17	601 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	ZZZ3	Q8IYH5	903 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	C9orf106	Q8NAJ2	232 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	TCP10L	Q8TDR4	215 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	TWIST2	Q8WVJ9	160 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	CIDEC	Q96AQ7	238 aa	Predicted RBP	21.3	■■□□□ 1
LSM4-204	ENST00000594828	DSN1	Q9H410	356 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	C3orf14	Q9HBI5	128 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	SH3BP4	Q9P0V3	963 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	FOXD3	Q9UJU5	478 aa	Predicted RBP	21.3	■■□□□ 1
LSM4-204	ENST00000594828	ABCG2	Q9UNQ0	655 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	RPH3A	Q9Y2J0	694 aa	Predicted RBP	21.3	■■□□□ 1
LSM4-204	ENST00000594828	OTOG	Q6ZRI0	2925 aa		21.3	■■□□□ 1
LSM4-204	ENST00000594828	KIAA1549	Q9HCM3	1950 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	TMEM233	B4DJY2	109 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828		B4DXG7	233 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	IL33	O95760	270 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	IL18BP	O95998	194 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	PRPS2	P11908	318 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	POU3F2	P20265	443 aa	Predicted RBP	21.29	■■□□□ 1
LSM4-204	ENST00000594828	TCEA1	P23193	301 aa	Known RBP	21.29	■■□□□ 1
LSM4-204	ENST00000594828	CHM	P24386	653 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	GABRA3	P34903	492 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	RFX3	P48380	749 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	CLK3	P49761	638 aa	Known RBP	21.29	■■□□□ 1
LSM4-204	ENST00000594828	LHX2	P50458	406 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	MANF	P55145	182 aa	Known RBP	21.29	■■□□□ 1
LSM4-204	ENST00000594828	DSCR4	P56555	118 aa	Predicted RBP	21.29	■■□□□ 1
LSM4-204	ENST00000594828	UGT3A2	Q3SY77	523 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	ZNF385B	Q569K4	471 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	EMB	Q6PCB8	327 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	CLHC1	Q8NHS4	586 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	ZFP28	Q8NHY6	868 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	AEN	Q8WTP8	325 aa	Known RBP	21.29	■■□□□ 1
LSM4-204	ENST00000594828	ZBED6CL	Q96FA7	236 aa	Predicted RBP	21.29	■■□□□ 1
LSM4-204	ENST00000594828	TM9SF2	Q99805	663 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	FLRT3	Q9NZU0	649 aa		21.29	■■□□□ 1
LSM4-204	ENST00000594828	TACC2	O95359	2948 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	CLCA1	A8K7I4	914 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	C17orf51	A8MQB3	221 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	TMIGD3	P0DMS9	266 aa	Predicted RBP	21.28	■■□□□ 1
LSM4-204	ENST00000594828	ADGRE4P	Q86SQ3	457 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	FADS6	Q8N9I5	356 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	CEP70	Q8NHQ1	597 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	WNT2B	Q93097	391 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	UCN2	Q96RP3	112 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	EQTN	Q9NQ60	294 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	FAM120C	Q9NX05	1096 aa	Known RBP	21.28	■■□□□ 1
LSM4-204	ENST00000594828	CRIM1	Q9NZV1	1036 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	MED11	Q9P086	117 aa		21.28	■■□□□ 1
LSM4-204	ENST00000594828	PIP5K1B	O14986	540 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	RCBTB2	O95199	551 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	KCNH1	O95259	989 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	ZNF708	P17019	499 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	ASMT	P46597	345 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	PRKAG1	P54619	331 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	CLDN18	P56856	261 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	STX5	Q13190	355 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	PDE7A	Q13946	482 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	ZCCHC23	Q6ZST2	131 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	OR2M3	Q8NG83	312 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	AGR3	Q8TD06	166 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	GPR151	Q8TDV0	419 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	DUSP19	Q8WTR2	217 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	ZFP3	Q96NJ6	502 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	G6PC3	Q9BUM1	346 aa		21.27	■■□□□ 1
LSM4-204	ENST00000594828	ACSS1	Q9NUB1	689 aa	Predicted RBP	21.27	■■□□□ 1
LSM4-204	ENST00000594828	MED12	Q93074	2177 aa		21.26	■□□□□ 0.99
LSM4-204	ENST00000594828	GXYLT2	A0PJZ3	443 aa		21.26	■□□□□ 0.99
LSM4-204	ENST00000594828	EEF1E1-BLOC1S5	C9J1V9	151 aa		21.26	■□□□□ 0.99
LSM4-204	ENST00000594828	EEF1E1	O43324	174 aa	Known RBP	21.26	■□□□□ 0.99
LSM4-204	ENST00000594828	CTAG2	O75638	210 aa		21.26	■□□□□ 0.99
LSM4-204	ENST00000594828	BCKDHA	P12694	445 aa		21.26	■□□□□ 0.99

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms