RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PRRC2AP48634 2157 aaKnown RBP11.4□□□□□ -0.59
UPF1-203ENST00000594504 FAM221AA4D161 298 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 ANKRD33BA6NCL7 494 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 PDPK1O15530 556 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 BCAS2O75934 225 aaPredicted RBP11.39□□□□□ -0.59
UPF1-203ENST00000594504 HPNP05981 417 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 KITP10721 976 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 BMP7P18075 431 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 LBPP18428 481 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 SOX18P35713 384 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 MASP1P48740 699 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 CDK9P50750 372 aaKnown RBP11.39□□□□□ -0.59
UPF1-203ENST00000594504 NCBP2P52298 156 aaKnown RBP eCLIP11.39□□□□□ -0.59
UPF1-203ENST00000594504 ZNF136P52737 540 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 EXOSC7Q15024 291 aaKnown RBP11.39□□□□□ -0.59
UPF1-203ENST00000594504 RPS6KA2Q15349 733 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 PRSS53Q2L4Q9 553 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 TRMT12Q53H54 448 aaKnown RBP11.39□□□□□ -0.59
UPF1-203ENST00000594504 ZNF628Q5EBL2 1059 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 VASNQ6EMK4 673 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 PLXDC2Q6UX71 529 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 YRDCQ86U90 279 aaKnown RBP11.39□□□□□ -0.59
UPF1-203ENST00000594504 CDC20BQ86Y33 519 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 WDR75Q8IWA0 830 aaKnown RBP11.39□□□□□ -0.59
UPF1-203ENST00000594504 OR9A2Q8NGT5 310 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 LINC01560Q8TB33 94 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 PIWIL2Q8TC59 973 aaKnown RBP11.39□□□□□ -0.59
UPF1-203ENST00000594504 WDYHV1Q96HA8 205 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 TRIB1Q96RU8 372 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 NODALQ96S42 347 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 UGT2B28Q9BY64 529 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 NXF5Q9H1B4 397 aaKnown RBP11.39□□□□□ -0.59
UPF1-203ENST00000594504 CLEC4MQ9H2X3 399 aaPredicted RBP11.39□□□□□ -0.59
UPF1-203ENST00000594504 UBQLN3Q9H347 655 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 ATP6V1HQ9UI12 483 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 ST6GALNAC2Q9UJ37 374 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 PCDHGB3Q9Y5G1 929 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 EXPH5Q8NEV8 1989 aa11.39□□□□□ -0.59
UPF1-203ENST00000594504 CAPN14A8MX76 684 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 FAM47E-STBD1D6RA91 191 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 SDHDO14521 159 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 DVL2O14641 736 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 SCAMP2O15127 329 aaKnown RBP11.38□□□□□ -0.59
UPF1-203ENST00000594504 ATP8B1O43520 1251 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 PLOD3O60568 738 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 CBX7O95931 251 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 IL2RAP01589 272 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 ABCB1P08183 1280 aaPredicted RBP11.38□□□□□ -0.59
UPF1-203ENST00000594504 IFI6P09912 130 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 G6PDP11413 515 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 PCSK2P16519 638 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 PRPS1L1P21108 318 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 GPX3P22352 226 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 TIMP3P35625 211 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 PTGDSP41222 190 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 ASCL1P50553 236 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 C21orf58P58505 322 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 MRPS35P82673 323 aaKnown RBP11.38□□□□□ -0.59
UPF1-203ENST00000594504 PTGR1Q14914 329 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 ZNF385BQ569K4 471 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 HSP90B2PQ58FF3 399 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 TBCELQ5QJ74 424 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 OGFOD2Q6N063 350 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 ANKRD26P1Q6NSI1 321 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 LARP4Q71RC2 724 aaKnown RBP eCLIP11.38□□□□□ -0.59
UPF1-203ENST00000594504 PACS2Q86VP3 889 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 C17orf47Q8NEP4 570 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 OR52R1Q8NGF1 315 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 ZFP28Q8NHY6 868 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 CKAP2Q8WWK9 683 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 KAT2AQ92830 837 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 RNASE6Q93091 150 aaKnown RBP11.38□□□□□ -0.59
UPF1-203ENST00000594504 NTNG2Q96CW9 530 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 ZBED6CLQ96FA7 236 aaPredicted RBP11.38□□□□□ -0.59
UPF1-203ENST00000594504 AMDHD1Q96NU7 426 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 PRPF18Q99633 342 aaKnown RBP11.38□□□□□ -0.59
UPF1-203ENST00000594504 FOXC2Q99958 501 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 ITPAQ9BY32 194 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 PRDM14Q9GZV8 571 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 CXXC4Q9H2H0 198 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 GLIPR2Q9H4G4 154 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 MED4Q9NPJ6 270 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 SH3BP4Q9P0V3 963 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 PRODH2Q9UF12 536 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 BCAP29Q9UHQ4 241 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 CBLCQ9ULV8 474 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 MAPRE3Q9UPY8 281 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 C15orf41Q9Y2V0 281 aa11.38□□□□□ -0.59
UPF1-203ENST00000594504 A0A087WV62 115 aa11.37□□□□□ -0.59
UPF1-203ENST00000594504 A6NNC1 897 aa11.37□□□□□ -0.59
UPF1-203ENST00000594504 PLOD2O00469 737 aa11.37□□□□□ -0.59
UPF1-203ENST00000594504 NME6O75414 186 aaPredicted RBP11.37□□□□□ -0.59
UPF1-203ENST00000594504 SNX4O95219 450 aa11.37□□□□□ -0.59
UPF1-203ENST00000594504 ABCD3P28288 659 aa11.37□□□□□ -0.59
UPF1-203ENST00000594504 EPHA3P29320 983 aa11.37□□□□□ -0.59
UPF1-203ENST00000594504 PTPN6P29350 595 aa11.37□□□□□ -0.59
UPF1-203ENST00000594504 FRKP42685 505 aaPredicted RBP11.37□□□□□ -0.59
UPF1-203ENST00000594504 DIO3P55073 304 aa11.37□□□□□ -0.59
UPF1-203ENST00000594504 CLDN8P56748 225 aa11.37□□□□□ -0.59
UPF1-203ENST00000594504 NRG3P56975 720 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms