RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ACBD4Q8NC06 268 aa13.9□□□□□ -0.18
TRIM28-203ENST00000593582 CEP70Q8NHQ1 597 aa13.9□□□□□ -0.18
TRIM28-203ENST00000593582 RNF138Q8WVD3 245 aa13.9□□□□□ -0.18
TRIM28-203ENST00000593582 PKNOX2Q96KN3 472 aa13.9□□□□□ -0.18
TRIM28-203ENST00000593582 OR2B2Q9GZK3 357 aa13.9□□□□□ -0.18
TRIM28-203ENST00000593582 EQTNQ9NQ60 294 aa13.9□□□□□ -0.18
TRIM28-203ENST00000593582 NPDC1Q9NQX5 325 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-203ENST00000593582 FBXL2Q9UKC9 423 aa13.9□□□□□ -0.18
TRIM28-203ENST00000593582 ABCG2Q9UNQ0 655 aa13.9□□□□□ -0.18
TRIM28-203ENST00000593582 ABCA12Q86UK0 2595 aa13.9□□□□□ -0.18
TRIM28-203ENST00000593582 PHF3Q92576 2039 aaKnown RBP13.9□□□□□ -0.18
TRIM28-203ENST00000593582 TACC2O95359 2948 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 SCAMP2O15127 329 aaKnown RBP13.89□□□□□ -0.19
TRIM28-203ENST00000593582 SKAP2O75563 359 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-203ENST00000593582 LYPLA1O75608 230 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-203ENST00000593582 IL33O95760 270 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 SERPINE1P05121 402 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 MYZAPP0CAP1 466 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 IGFBP2P18065 325 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 SRD5A2P31213 254 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 GABRA3P34903 492 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 RFX3P48380 749 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 CLK3P49761 638 aaKnown RBP13.89□□□□□ -0.19
TRIM28-203ENST00000593582 PRKAG1P54619 331 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 GAS1P54826 345 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 CHI3L2Q15782 390 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 SLC25A35Q3KQZ1 300 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 C6orf136Q5SQH8 315 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 DCST1Q5T197 706 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 AAGABQ6PD74 315 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 ENPP6Q6UWR7 440 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 ZNF295-AS1Q8N0V1 137 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 FNDC5Q8NAU1 212 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 NUP43Q8NFH3 380 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 OR4K17Q8NGC6 315 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 GPR151Q8TDV0 419 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 TUBGCP3Q96CW5 907 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 WDYHV1Q96HA8 205 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 C3orf30Q96M34 536 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 TREX2Q9BQ50 279 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-203ENST00000593582 SDHAF3Q9NRP4 125 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 FAM120CQ9NX05 1096 aaKnown RBP13.89□□□□□ -0.19
TRIM28-203ENST00000593582 NTMQ9P121 344 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 PPP4R1LQ9P1A2 415 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 GIMAP2Q9UG22 337 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 DKKL1Q9UK85 242 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 MRPS18CQ9Y3D5 142 aaKnown RBP13.89□□□□□ -0.19
TRIM28-203ENST00000593582 PKDREJQ9NTG1 2253 aa13.89□□□□□ -0.19
TRIM28-203ENST00000593582 SCO2O43819 266 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 ZWINTO95229 277 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 IL2RAP01589 272 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 DPP4P27487 766 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 TIMP3P35625 211 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 PRR5P85299 388 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 RCAN2Q14206 197 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 PTGR1Q14914 329 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 MLC1Q15049 377 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 CPTPQ5TA50 214 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 IL23RQ5VWK5 629 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 NSUN5P2Q63ZY6 315 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 SEM1Q6ZVN7 128 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 LIX1LQ8IVB5 337 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 TRIM42Q8IWZ5 723 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 CDRT4Q8N9R6 151 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 TNIP2Q8NFZ5 429 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 C14orf79Q96F83 325 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 ZIM3Q96PE6 472 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 MS4A4EQ96PG1 132 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 TRIB1Q96RU8 372 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 PRPF18Q99633 342 aaKnown RBP13.88□□□□□ -0.19
TRIM28-203ENST00000593582 C1orf50Q9BV19 199 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 KCNK9Q9NPC2 374 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 ATAD3AQ9NVI7 634 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 ATP6V1HQ9UI12 483 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 EIF3LQ9Y262 564 aaKnown RBP13.88□□□□□ -0.19
TRIM28-203ENST00000593582 ACTL7BQ9Y614 415 aa13.88□□□□□ -0.19
TRIM28-203ENST00000593582 MYO9AB2RTY4 2548 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 CD8B2A6NJW9 211 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 DVL2O14641 736 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 EMC8O43402 210 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 ITM2AO43736 263 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 FADS1O60427 444 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 SNUPNO95149 360 aaKnown RBP13.87□□□□□ -0.19
TRIM28-203ENST00000593582 CPN1P15169 458 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 EFNA1P20827 205 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-203ENST00000593582 PRPS1L1P21108 318 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 BMP5P22003 454 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 GFRA1P56159 465 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 DSCR4P56555 118 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-203ENST00000593582 ABCE1P61221 599 aaKnown RBP13.87□□□□□ -0.19
TRIM28-203ENST00000593582 MAD2L1Q13257 205 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-203ENST00000593582 TNFAIP8L3Q5GJ75 292 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 CES4AQ5XG92 561 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 NATD1Q8N6N6 113 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 OR7A2PQ8NGA2 310 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 ZPLD1Q8TCW7 415 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 PIK3R3Q92569 461 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 SLC9A6Q92581 669 aa13.87□□□□□ -0.19
TRIM28-203ENST00000593582 HOXB13Q92826 284 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-203ENST00000593582 ZBTB9Q96C00 473 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms