RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CDKN2AIPNLQ96HQ2 116 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 ABCG8Q9H221 673 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 FAM212BQ9NTI7 297 aaPredicted RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 GDAP2Q9NXN4 497 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 CLEC5AQ9NY25 188 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 HMG20BQ9P0W2 317 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 PSORS1C1Q9UIG5 152 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 LEF1Q9UJU2 399 aaPredicted RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 CLEC4AQ9UMR7 237 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 SIPA1L3O60292 1781 aaPredicted RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 RGPD5Q99666 1765 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 PHLPP1O60346 1717 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 TOGARAM1Q9Y4F4 1720 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 ATP8B3O60423 1300 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 AFF2P51816 1311 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 MAP3K15Q6ZN16 1313 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 BCLAF3A2AJT9 711 aaKnown RBP4.01□□□□□ -1.77
NUP88-213ENST00000576862 VGLL3A8MV65 326 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 IFNB1P01574 187 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 IGHG3P01860 377 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 LYNP07948 512 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 KRTAP1-4P0C5Y4 121 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 TPBGLP0DKB5 382 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 GLRA1P23415 457 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 ID1P41134 155 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 ELK3P41970 407 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 CCR4P51679 360 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 SLC34A1Q06495 639 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 SPHARQ15513 63 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 FBXO48Q5FWF7 155 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 NHLRC3Q5JS37 347 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 LRRC38Q5VT99 294 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 CAPN13Q6MZZ7 669 aaPredicted RBP4.01□□□□□ -1.77
NUP88-213ENST00000576862 SLC25A24Q6NUK1 477 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 ZNF730Q6ZMV8 503 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 CDH26Q8IXH8 852 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 ZNF444Q8N0Y2 327 aaPredicted RBP4.01□□□□□ -1.77
NUP88-213ENST00000576862 LINC00469Q8N7U9 141 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 ZNF781Q8N8C0 355 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 CLEC1AQ8NC01 280 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 PSMA8Q8TAA3 256 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 LRRC45Q96CN5 670 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 C11orf24Q96F05 449 aaPredicted RBP4.01□□□□□ -1.77
NUP88-213ENST00000576862 ANKRD27Q96NW4 1050 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 FAM111AQ96PZ2 611 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 PANX3Q96QZ0 392 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 KCNK16Q96T55 309 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 HSD17B14Q9BPX1 270 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 CAPS2Q9BXY5 557 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 LRRC2Q9BYS8 371 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 PARVGQ9HBI0 331 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 HOMER3Q9NSC5 361 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 ASB3Q9Y575 518 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 OR1A2Q9Y585 309 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 PAPPAQ13219 1627 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 ATRNO75882 1429 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 NRAPQ86VF7 1730 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 SHANK3Q9BYB0 1731 aa4.01□□□□□ -1.77
NUP88-213ENST00000576862 C5P01031 1676 aa4□□□□□ -1.77
NUP88-213ENST00000576862 PLCH1Q4KWH8 1693 aa4□□□□□ -1.77
NUP88-213ENST00000576862 GAKO14976 1311 aa4□□□□□ -1.77
NUP88-213ENST00000576862 UBN2Q6ZU65 1347 aa4□□□□□ -1.77
NUP88-213ENST00000576862 SCN11AQ9UI33 1791 aa4□□□□□ -1.77
NUP88-213ENST00000576862 TEX48A0A1B0GUV7 120 aa4□□□□□ -1.77
NUP88-213ENST00000576862 GOLGA6L7A0A1B0GV03 622 aa4□□□□□ -1.77
NUP88-213ENST00000576862 A0A1W2PQ72 361 aa4□□□□□ -1.77
NUP88-213ENST00000576862 ZSCAN5CA6NGD5 496 aaPredicted RBP4□□□□□ -1.77
NUP88-213ENST00000576862 ERVV-1B6SEH8 477 aa4□□□□□ -1.77
NUP88-213ENST00000576862 H0YCG3 227 aa4□□□□□ -1.77
NUP88-213ENST00000576862 NDUFS8O00217 210 aa4□□□□□ -1.77
NUP88-213ENST00000576862 CCSO14618 274 aa4□□□□□ -1.77
NUP88-213ENST00000576862 CASC3O15234 703 aaKnown RBP4□□□□□ -1.77
NUP88-213ENST00000576862 TTI1O43156 1089 aa4□□□□□ -1.77
NUP88-213ENST00000576862 CSO75390 466 aaKnown RBP4□□□□□ -1.77
NUP88-213ENST00000576862 CSDE1O75534 798 aaKnown RBP4□□□□□ -1.77
NUP88-213ENST00000576862 PCCAP05165 728 aaPredicted RBP4□□□□□ -1.77
NUP88-213ENST00000576862 POLR2MP0CAP2 368 aa4□□□□□ -1.77
NUP88-213ENST00000576862 PRG2P13727 222 aa4□□□□□ -1.77
NUP88-213ENST00000576862 CHMLP26374 656 aa4□□□□□ -1.77
NUP88-213ENST00000576862 ATXN3P54252 364 aaPredicted RBP4□□□□□ -1.77
NUP88-213ENST00000576862 CHIT1Q13231 466 aa4□□□□□ -1.77
NUP88-213ENST00000576862 DPYSL2Q16555 572 aa4□□□□□ -1.77
NUP88-213ENST00000576862 PCK2Q16822 640 aa4□□□□□ -1.77
NUP88-213ENST00000576862 CFAP221Q4G0U5 840 aa4□□□□□ -1.77
NUP88-213ENST00000576862 METTL11BQ5VVY1 283 aa4□□□□□ -1.77
NUP88-213ENST00000576862 RNLSQ5VYX0 342 aa4□□□□□ -1.77
NUP88-213ENST00000576862 ETFRF1Q6IPR1 90 aa4□□□□□ -1.77
NUP88-213ENST00000576862 SMIM5Q71RC9 77 aa4□□□□□ -1.77
NUP88-213ENST00000576862 TAF8Q7Z7C8 310 aa4□□□□□ -1.77
NUP88-213ENST00000576862 CCDC71Q8IV32 467 aaPredicted RBP4□□□□□ -1.77
NUP88-213ENST00000576862 CCDC83Q8IWF9 413 aa4□□□□□ -1.77
NUP88-213ENST00000576862 FBXW8Q8N3Y1 598 aa4□□□□□ -1.77
NUP88-213ENST00000576862 BBOF1Q8ND07 529 aa4□□□□□ -1.77
NUP88-213ENST00000576862 AGR3Q8TD06 166 aa4□□□□□ -1.77
NUP88-213ENST00000576862 ATP6V1G3Q96LB4 118 aa4□□□□□ -1.77
NUP88-213ENST00000576862 SSX3Q99909 188 aa4□□□□□ -1.77
NUP88-213ENST00000576862 SH3GL1Q99961 368 aa4□□□□□ -1.77
NUP88-213ENST00000576862 NFKBIZQ9BYH8 718 aa4□□□□□ -1.77
NUP88-213ENST00000576862 DPH5Q9H2P9 285 aa4□□□□□ -1.77
NUP88-213ENST00000576862 XKR8Q9H6D3 395 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms