RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RAB3CQ96E17 227 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 ING1Q9UK53 422 aaPredicted RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 J3KR12 359 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 CYTIPO60759 359 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 TBX18O95935 607 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 SAGP10523 405 aaPredicted RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 TYMPP19971 482 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 PSMA1P25786 263 aaKnown RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 ABCD3P28288 659 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 NOS3P29474 1203 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 GRK4P32298 578 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 SELENOPP49908 381 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 TAS2R39P59534 338 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 MAXP61244 160 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 BIKQ13323 160 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 ZNF177Q13360 481 aaPredicted RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 KEAP1Q14145 624 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 MRPL58Q14197 206 aaKnown RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 TMEM207Q6UWW9 146 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 BAIAP2L2Q6UXY1 529 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 CFAP206Q8IYR0 622 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 RTL3Q8N8U3 475 aaKnown RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 TBL1YQ9BQ87 522 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 CCDC86Q9H6F5 360 aaKnown RBP10.22□□□□□ -0.77
CLK3-226ENST00000569406 NANSQ9NR45 359 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 RNF186Q9NXI6 227 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 NOD1Q9Y239 953 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 PLXNA4Q9HCM2 1894 aa10.22□□□□□ -0.77
CLK3-226ENST00000569406 MEIKINA0A087WXM9 373 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 TMEM72A0PK05 275 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 SUPT3HB4E1H0 165 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 FADS1O60427 444 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 TXNDC12O95881 172 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 ANKRD34CP0C6C1 535 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 OR8U8P0C7N1 319 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 NPBWR1P48145 328 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 GAMTQ14353 236 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 HLXQ14774 488 aaPredicted RBP10.21□□□□□ -0.77
CLK3-226ENST00000569406 RSU1Q15404 277 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 OR52W1Q6IF63 320 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 OR4F6Q8NGB9 312 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 C14orf79Q96F83 325 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 RHOJQ9H4E5 214 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 WDR26Q9H7D7 661 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 RBM22Q9NW64 420 aaKnown RBP eCLIP10.21□□□□□ -0.779e-10■□□□□ 8.1
CLK3-226ENST00000569406 PSORS1C1Q9UIG5 152 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 BACE2Q9Y5Z0 518 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 SCN5AQ14524 2016 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 CASC3O15234 703 aaKnown RBP10.21□□□□□ -0.77
CLK3-226ENST00000569406 DIRAS1O95057 198 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 SIX3O95343 332 aaPredicted RBP10.21□□□□□ -0.77
CLK3-226ENST00000569406 BPNT1O95861 308 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 IGLV3-27P01718 113 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 TMIGD3P0DMS9 266 aaPredicted RBP10.21□□□□□ -0.77
CLK3-226ENST00000569406 G6PDP11413 515 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 ELNP15502 786 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 NFYAP23511 347 aaPredicted RBP10.21□□□□□ -0.77
CLK3-226ENST00000569406 PTPN6P29350 595 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 CTBP2P56545 445 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 SERINC3Q13530 473 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 MS4A13Q5J8X5 152 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.21□□□□□ -0.77
CLK3-226ENST00000569406 QSOX2Q6ZRP7 698 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 CDK20Q8IZL9 346 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 PRSS35Q8N3Z0 413 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 C2CD4AQ8NCU7 369 aaPredicted RBP10.21□□□□□ -0.77
CLK3-226ENST00000569406 OR9Q1Q8NGQ5 310 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 IGSF8Q969P0 613 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 ZNF845Q96IR2 970 aaPredicted RBP10.21□□□□□ -0.77
CLK3-226ENST00000569406 ASB16Q96NS5 453 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 LRRC3Q9BY71 257 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 PLCXD1Q9NUJ7 323 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 PCDHB8Q9UN66 801 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 SCML2Q9UQR0 700 aa10.21□□□□□ -0.77
CLK3-226ENST00000569406 CLCA1A8K7I4 914 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 MBTPS2O43462 519 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 SEC22BO75396 215 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 S1PR4O95977 384 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 HMBSP08397 361 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 CD46P15529 392 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 MSX1P28360 303 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 ADPRHP54922 357 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 RAB10P61026 200 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 RBBP4Q09028 425 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 SLC39A12Q504Y0 691 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 Q5PR19 223 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 CCDC71Q8IV32 467 aaPredicted RBP10.21□□□□□ -0.78
CLK3-226ENST00000569406 SKA3Q8IX90 412 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 UMODL1-AS1Q8N2C9 162 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 TEX26Q8N6G2 289 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 FAM181AQ8N9Y4 354 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 UBAC2Q8NBM4 344 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 RSC1A1Q92681 617 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 F2RL3Q96RI0 385 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 PRDM13Q9H4Q3 707 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 SEMA4BQ9NPR2 832 aaPredicted RBP10.21□□□□□ -0.78
CLK3-226ENST00000569406 LANCL2Q9NS86 450 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 ZSCAN32Q9NX65 697 aa10.21□□□□□ -0.78
CLK3-226ENST00000569406 PHF11Q9UIL8 331 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms