RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZIM2Q9NZV7 527 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 C15orf41Q9Y2V0 281 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 PCDHGB3Q9Y5G1 929 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 WIF1Q9Y5W5 379 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 GPR45Q9Y5Y3 372 aa11.9□□□□□ -0.5
CLK3-224ENST00000568605 DOCK7Q96N67 2140 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 RNF103-CHMP3A0A140T963 221 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 OR14I1A6ND48 311 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 LRRC3CA6NJW4 275 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 DUXAA6NLW8 204 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 SNPHO15079 494 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 SUSD5O60279 629 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 HCN1O60741 890 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 IGHG3P01860 377 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 IL6P05231 212 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 TPOP07202 933 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 MAN2A2P49641 1150 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 NME5P56597 212 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 UFM1P61960 85 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 POU6F2P78424 691 aaPredicted RBP11.89□□□□□ -0.51
CLK3-224ENST00000568605 GAB1Q13480 694 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 SLC10A1Q14973 349 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 TOMM20Q15388 145 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 C1QL3Q5VWW1 255 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 BICRALQ6AI39 1079 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 CDC73Q6P1J9 531 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 Q6ZPB1 254 aaPredicted RBP11.89□□□□□ -0.51
CLK3-224ENST00000568605 MAVSQ7Z434 540 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 WDR53Q7Z5U6 358 aaPredicted RBP11.89□□□□□ -0.51
CLK3-224ENST00000568605 SPPL2CQ8IUH8 684 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 CLECL1Q8IZS7 167 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 MIER2Q8N344 545 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 OR4N2Q8NGD1 307 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 FBXO30Q8TB52 745 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 ADAMTS15Q8TE58 950 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 STON2Q8WXE9 905 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 SARAFQ96BY9 339 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 GIMAP5Q96F15 307 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 SLC35G5Q96KT7 338 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 OR52B2Q96RD2 323 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 G6PC3Q9BUM1 346 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 CCDC28BQ9BUN5 200 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 DEFB127Q9H1M4 99 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 CXorf36Q9H7Y0 433 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 PROK2Q9HC23 129 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 PPP4R1LQ9P1A2 415 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 ZNF835Q9Y2P0 537 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 HEATR5AQ86XA9 2040 aa11.89□□□□□ -0.51
CLK3-224ENST00000568605 DOPEY1Q5JWR5 2465 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 RELNP78509 3460 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 TRGV5A0A0B4J1U4 118 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 A0A1B0GTH9 108 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 AQP7O14520 342 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 ZNF195O14628 629 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 GNB5O14775 395 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 BCKDKO14874 412 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 LRRTM2O43300 516 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 ICOSLGO75144 302 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 SLC22A3O75751 556 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 CPSF4O95639 269 aaKnown RBP11.88□□□□□ -0.51
CLK3-224ENST00000568605 AK1P00568 194 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 PGRP06401 933 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 ACP2P11117 423 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 ESRRAP11474 423 aaPredicted RBP11.88□□□□□ -0.51
CLK3-224ENST00000568605 CYP4B1P13584 511 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 HPGDP15428 266 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 ATP6V1C1P21283 382 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 LCN1P31025 176 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 MAP3K8P41279 467 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 AQP5P55064 265 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 HSF1Q00613 529 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 DUSP5Q16690 384 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 TIGD3Q6B0B8 471 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 MSANTD1Q6ZTZ1 278 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 FJX1Q86VR8 437 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 ANKRD46Q86W74 232 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 SLC16A11Q8NCK7 471 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 OR5AK3PQ8NH89 298 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 PIK3R3Q92569 461 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 OR52E6Q96RD3 313 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 PANX1Q96RD7 426 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 BTBD2Q9BX70 525 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 TBL1XR1Q9BZK7 514 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 TP63Q9H3D4 680 aaPredicted RBP11.88□□□□□ -0.51
CLK3-224ENST00000568605 PIGUQ9H490 435 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 RMND5AQ9H871 391 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 GALNT9Q9HCQ5 603 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 ACKR4Q9NPB9 350 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 SDR39U1Q9NRG7 319 aaPredicted RBP11.88□□□□□ -0.51
CLK3-224ENST00000568605 BTNL2Q9UIR0 455 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 SH3BGRL2Q9UJC5 107 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 ERRFI1Q9UJM3 462 aaPredicted RBP11.88□□□□□ -0.51
CLK3-224ENST00000568605 ICE1Q9Y2F5 2266 aa11.88□□□□□ -0.51
CLK3-224ENST00000568605 FIGNL2A6NMB9 653 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 CCL21O00585 134 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 SCO2O43819 266 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 EDF1O60869 148 aaKnown RBP11.87□□□□□ -0.51
CLK3-224ENST00000568605 SEMA7AO75326 666 aa11.87□□□□□ -0.51
CLK3-224ENST00000568605 TRAPPC6AO75865 159 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms