RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FAM215AQ9Y5M1 114 aa13.71□□□□□ -0.21
VPS39-210ENST00000568357 DNHD1Q96M86 4753 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 A0A1W2PRB8 838 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 C17orf51A8MQB3 221 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 B4DXG7 233 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 EMC8O43402 210 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 FADS1O60427 444 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 SNNO75324 88 aaPredicted RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 IL33O95760 270 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 IGKV1D-16P01601 117 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 PRPS1L1P21108 318 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 ACVR2AP27037 513 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 HTR1EP28566 365 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 RPL3P39023 403 aaKnown RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 CLDN8P56748 225 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 MAD2L1Q13257 205 aaPredicted RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 TOMM20Q15388 145 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 ZNHIT3Q15649 155 aaPredicted RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 DECR1Q16698 335 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 ZNF630Q2M218 657 aaPredicted RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 WIPI1Q5MNZ9 446 aaPredicted RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 WLSQ5T9L3 541 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 TMEM211Q6ICI0 200 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 OR5M10Q6IEU7 315 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 YRDCQ86U90 279 aaKnown RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 SLC16A11Q8NCK7 471 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 CEP70Q8NHQ1 597 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 GPR151Q8TDV0 419 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 SDCCAG3Q96C92 435 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 FAM120BQ96EK7 910 aaKnown RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 TIMP4Q99727 224 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 Q9N2J8 555 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 NKIRAS1Q9NYS0 192 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 NOP53Q9NZM5 478 aaKnown RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 KLF2Q9Y5W3 355 aaPredicted RBP13.7□□□□□ -0.22
VPS39-210ENST00000568357 GTF3C1Q12789 2109 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 ZNF407Q9C0G0 2248 aa13.7□□□□□ -0.22
VPS39-210ENST00000568357 HIVEP1P15822 2718 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 NINQ8N4C6 2090 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 C15orf38-AP3S2A0A0A6YYH1 394 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 FIGNL2A6NMB9 653 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 CBR3O75828 277 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 NKX2-2O95096 273 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 CLDN14O95500 239 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 C6orf47O95873 294 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 GLI4P10075 376 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 ACP2P11117 423 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 RFX3P48380 749 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 NUP107P57740 925 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 C21orf58P58505 322 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 CRYZQ08257 329 aaKnown RBP13.69□□□□□ -0.22
VPS39-210ENST00000568357 EXOSC6Q5RKV6 272 aaKnown RBP13.69□□□□□ -0.22
VPS39-210ENST00000568357 AGBL2Q5U5Z8 902 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 VASNQ6EMK4 673 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 PLCZ1Q86YW0 608 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 CDRT4Q8N9R6 151 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 FAM83FQ8NEG4 500 aaPredicted RBP13.69□□□□□ -0.22
VPS39-210ENST00000568357 PSMA8Q8TAA3 256 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 FBXO30Q8TB52 745 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 OR5P2Q8WZ92 322 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 SLC9A6Q92581 669 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 PRPF18Q99633 342 aaKnown RBP13.69□□□□□ -0.22
VPS39-210ENST00000568357 TTYH2Q9BSA4 534 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 YIPF4Q9BSR8 244 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 RTN4RQ9BZR6 473 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 MANSC1Q9H8J5 431 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 MEAF6Q9HAF1 191 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 C3orf14Q9HBI5 128 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 THAP1Q9NVV9 213 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 FBXL2Q9UKC9 423 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 WIF1Q9Y5W5 379 aa13.69□□□□□ -0.22
VPS39-210ENST00000568357 MED13LQ71F56 2210 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 TTC36A6NLP5 189 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 C19orf84I3L1E1 186 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 ANKRD28O15084 1053 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 WDR1O75083 606 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 DDX5P17844 614 aaKnown RBP13.68□□□□□ -0.22
VPS39-210ENST00000568357 BMP7P18075 431 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 LBPP18428 481 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 EVI2BP34910 448 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 MRPS22P82650 360 aaKnown RBP13.68□□□□□ -0.22
VPS39-210ENST00000568357 DUSP5Q16690 384 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 PGS1Q32NB8 556 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 MFSD12Q6NUT3 480 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 SZRD1Q7Z422 152 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 GALNT10Q86SR1 603 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 CCDC71Q8IV32 467 aaPredicted RBP13.68□□□□□ -0.22
VPS39-210ENST00000568357 MCEMP1Q8IX19 187 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 KIRREL3Q8IZU9 778 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 RND1Q92730 232 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 OTUB1Q96FW1 271 aaPredicted RBP13.68□□□□□ -0.22
VPS39-210ENST00000568357 RMND5BQ96G75 393 aaPredicted RBP13.68□□□□□ -0.22
VPS39-210ENST00000568357 MS4A4EQ96PG1 132 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 DUSP26Q9BV47 211 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 BHLHE41Q9C0J9 482 aaPredicted RBP13.68□□□□□ -0.22
VPS39-210ENST00000568357 CXorf36Q9H7Y0 433 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 ATAD3AQ9NVI7 634 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 FBXO34Q9NWN3 711 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 RNF6Q9Y252 685 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 PCDHGB3Q9Y5G1 929 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms