RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 H3BQF6 201 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 UPK1AO00322 258 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 HCRTR2O43614 444 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 FADS1O60427 444 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 GLRA3O75311 464 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 TGM6O95932 706 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 KLK2P20151 261 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 TCEA1P23193 301 aaKnown RBP14.55□□□□□ -0.08
CLN3-229ENST00000567963 CPA2P48052 419 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 B3GALT5-AS1P59052 145 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 EEF1A1P68104 462 aaKnown RBP14.55□□□□□ -0.08
CLN3-229ENST00000567963 ZNF155Q12901 538 aaPredicted RBP14.55□□□□□ -0.08
CLN3-229ENST00000567963 SH2D4BQ5SQS7 431 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 EEF1A1P5Q5VTE0 462 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 TMEM107Q6UX40 140 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 PAMR1Q6UXH9 720 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 FRMD7Q6ZUT3 714 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 GRAMD2AQ8IUY3 354 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 OR2L13Q8N349 312 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 FADS6Q8N9I5 356 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 OR4K17Q8NGC6 315 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 DACH2Q96NX9 599 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 RHOXF2Q9BQY4 288 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 YIPF4Q9BSR8 244 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 DSN1Q9H410 356 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 MYNNQ9NPC7 610 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 PPP4R1LQ9P1A2 415 aa14.55□□□□□ -0.08
CLN3-229ENST00000567963 POLR3HQ9Y535 204 aaPredicted RBP14.55□□□□□ -0.08
CLN3-229ENST00000567963 ABCA4P78363 2273 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 PCNX3Q9H6A9 2034 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 SCO2O43819 266 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 DIAPH2O60879 1101 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 TNFSF13O75888 250 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 RSL1D1O76021 490 aaKnown RBP14.54□□□□□ -0.08
CLN3-229ENST00000567963 PSMG1O95456 288 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 RAF1P04049 648 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 PROCP04070 461 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 PEPDP12955 493 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 DIO3P55073 304 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 DNAJB13P59910 316 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 PPP2R2AP63151 447 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 CCDC153Q494R4 210 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 NOXRED1Q6NXP6 359 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 ELP4Q96EB1 424 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 AMDHD1Q96NU7 426 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 RTN4RQ9BZR6 473 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 TNFRSF12AQ9NP84 129 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 SDHAF3Q9NRP4 125 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 MED11Q9P086 117 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 PACSIN3Q9UKS6 424 aa14.54□□□□□ -0.08
CLN3-229ENST00000567963 ATE1O95260 518 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 NTSP30990 170 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 CCT5P48643 541 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 KEAP1Q14145 624 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 KIAA0040Q15053 153 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 DECR1Q16698 335 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 OR2M3Q8NG83 312 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 EGLN2Q96KS0 407 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 Q9N2J8 555 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 RRAGDQ9NQL2 400 aaPredicted RBP14.53□□□□□ -0.08
CLN3-229ENST00000567963 DDX18Q9NVP1 670 aaKnown RBP14.53□□□□□ -0.08
CLN3-229ENST00000567963 FLRT3Q9NZU0 649 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 ABCG2Q9UNQ0 655 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 CCL27Q9Y4X3 112 aa14.53□□□□□ -0.08
CLN3-229ENST00000567963 A0A1W2PNV4 684 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 SH3D21A4FU49 640 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 PLIN3O60664 434 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 CRCPO75575 148 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 IL33O95760 270 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 HRGP04196 525 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 CRHP06850 196 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 UROSP10746 265 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 HK1P19367 917 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 CRHR1P34998 444 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 CLDN15P56746 228 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 ADAM8P78325 824 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 FOXD4Q12950 439 aaPredicted RBP14.52□□□□□ -0.08
CLN3-229ENST00000567963 GANABQ14697 944 aaKnown RBP14.52□□□□□ -0.08
CLN3-229ENST00000567963 ZNHIT3Q15649 155 aaPredicted RBP14.52□□□□□ -0.08
CLN3-229ENST00000567963 CFAP157Q5JU67 520 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 IKBIPQ70UQ0 350 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 CHMP1BQ7LBR1 199 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 P4HA3Q7Z4N8 544 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 UBQLNLQ8IYU4 475 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 DUSP19Q8WTR2 217 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 STARD4Q96DR4 205 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 METTL2AQ96IZ6 378 aaKnown RBP14.52□□□□□ -0.08
CLN3-229ENST00000567963 LMF2Q9BU23 707 aaKnown RBP14.52□□□□□ -0.08
CLN3-229ENST00000567963 OXSMQ9NWU1 459 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 MRTO4Q9UKD2 239 aaKnown RBP14.52□□□□□ -0.08
CLN3-229ENST00000567963 ZNF337Q9Y3M9 751 aa14.52□□□□□ -0.08
CLN3-229ENST00000567963 NIPBLQ6KC79 2804 aaeCLIP14.52□□□□□ -0.09
CLN3-229ENST00000567963 SLC22A20A6NK97 555 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 MSTNO14793 375 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 SEC22BO75396 215 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 SHBGP04278 402 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 IFI6P09912 130 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 PRPH2P23942 346 aa14.51□□□□□ -0.09
CLN3-229ENST00000567963 SUCLG1P53597 346 aaKnown RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms