RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 QPRTQ15274 297 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 SNAPC1Q16533 368 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 SYPL1Q16563 259 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 CRTC2Q53ET0 693 aaPredicted RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 KIAA1324Q6UXG2 1013 aaKnown RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 C17orf64Q86WR6 236 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF547Q8IVP9 402 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 GRPEL2Q8TAA5 225 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ENKURQ8TC29 256 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 KLK6Q92876 244 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 EXOSC8Q96B26 276 aaKnown RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 F2RL3Q96RI0 385 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 AIF1LQ9BQI0 150 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 RERGLQ9H628 205 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 GPR34Q9UPC5 381 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ZFR2Q9UPR6 939 aaKnown RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ASF1AQ9Y294 204 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 SF3B6Q9Y3B4 125 aaKnown RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 BOLA1Q9Y3E2 137 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 PRODHO43272 600 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 FHP07954 510 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 OR12D1P0DN82 309 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 NR2F1P10589 423 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 GABRG2P18507 467 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 PPP2R1BP30154 601 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 KIR2DL3P43628 341 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 GAS1P54826 345 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 ADPRHP54922 357 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 P2RX3P56373 397 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 PPP3R1P63098 170 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 FZD5Q13467 585 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 MLC1Q15049 377 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 YIF1BQ5BJH7 314 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 LCN1P1Q5VSP4 162 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 RAET1GQ6H3X3 334 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 QSOX2Q6ZRP7 698 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF438Q7Z4V0 828 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 SLC38A6Q8IZM9 456 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 PLA2G15Q8NCC3 412 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 OR2L2Q8NH16 312 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 HMGB4Q8WW32 186 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 TM9SF4Q92544 642 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 UFD1Q92890 307 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 FAM131CQ96AQ9 280 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 IL17FQ96PD4 163 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 FYTTD1Q96QD9 318 aaKnown RBP12.42□□□□□ -0.42
VPS4A-204ENST00000566354 SPATA5L1Q9BVQ7 753 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 ACAT2Q9BWD1 397 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 PELI2Q9HAT8 420 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 PLXND1Q9Y4D7 1925 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 PRAMEF27A3QJZ7 478 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 M0R3H8 397 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 PLRG1O43660 514 aaKnown RBP12.42□□□□□ -0.42
VPS4A-204ENST00000566354 HCN1O60741 890 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 CHRM5P08912 532 aaPredicted RBP12.42□□□□□ -0.42
VPS4A-204ENST00000566354 GABRA5P31644 462 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 GPR1P46091 355 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 RPS25P62851 125 aaKnown RBP12.42□□□□□ -0.42
VPS4A-204ENST00000566354 FGL2Q14314 439 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.42□□□□□ -0.42
VPS4A-204ENST00000566354 OR2G6Q5TZ20 316 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 PLET1Q6UQ28 207 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 IQCHQ86VS3 1027 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 TMEM151BQ8IW70 566 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 C2orf73Q8N5S3 287 aaPredicted RBP12.42□□□□□ -0.42
VPS4A-204ENST00000566354 CAMKK1Q8N5S9 505 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 MORN4Q8NDC4 146 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 TMEM163Q8TC26 289 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 XAGE5Q8WWM1 108 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 TRIM63Q969Q1 353 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 POLMQ9NP87 494 aaPredicted RBP12.42□□□□□ -0.42
VPS4A-204ENST00000566354 PLSCR3Q9NRY6 295 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 MAN2C1Q9NTJ4 1040 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 TAS2R7Q9NYW3 318 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 C5AR2Q9P296 337 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 WNT16Q9UBV4 365 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 FBXW2Q9UKT8 454 aa12.42□□□□□ -0.42
VPS4A-204ENST00000566354 EXOSC1Q9Y3B2 195 aaKnown RBP12.42□□□□□ -0.42
VPS4A-204ENST00000566354 C19orf67A6NJJ6 358 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 BET1O15155 118 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 PAK4O96013 591 aaPredicted RBP12.41□□□□□ -0.42
VPS4A-204ENST00000566354 HLA-DQB1P01920 261 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 CSF2P04141 144 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 PRKACAP17612 351 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 MTNR1AP48039 350 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 GNA13Q14344 377 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 CD200R1LQ6Q8B3 271 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 METAP1DQ6UB28 335 aaPredicted RBP12.41□□□□□ -0.42
VPS4A-204ENST00000566354 SLC36A4Q6YBV0 504 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF765Q7L2R6 523 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 PDZD3Q86UT5 571 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 COMTD1Q86VU5 262 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 NUDT13Q86X67 352 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 GALNT11Q8NCW6 608 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 C19orf18Q8NEA5 215 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 ATP6V1C2Q8NEY4 427 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 OR52P1PQ8NH57 321 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 UBASH3BQ8TF42 649 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 GATAD2BQ8WXI9 593 aa12.41□□□□□ -0.42
VPS4A-204ENST00000566354 RNFT2Q96EX2 444 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms