RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CACNA1CQ13936 2221 aa15.83■□□□□ 0.13
CLN3-217ENST00000565354 NAV3Q8IVL0 2385 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 CCDC154A6NI56 674 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 RFXANKO14593 260 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 HS6ST1O60243 411 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 ABCB7O75027 752 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 HMGN2P05204 90 aaKnown RBP15.83■□□□□ 0.12
CLN3-217ENST00000565354 COX6B1P14854 86 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 CNR1P21554 472 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 UQCRC2P22695 453 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 CHI3L1P36222 383 aaPredicted RBP15.83■□□□□ 0.12
CLN3-217ENST00000565354 MRPL19P49406 292 aaKnown RBP15.83■□□□□ 0.12
CLN3-217ENST00000565354 GYS2P54840 703 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 GNGT1P63211 74 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 KCNJ2P63252 427 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 PSG6Q00889 435 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 EFR3AQ14156 821 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 KRTAP21-3Q3LHN1 58 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 CYP27C1Q4G0S4 372 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 AGKQ53H12 422 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 PRAMEF20Q5VT98 475 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 METTL21CQ5VZV1 264 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 ZNF324BQ6AW86 544 aaPredicted RBP15.83■□□□□ 0.12
CLN3-217ENST00000565354 ANGPTL8Q6UXH0 198 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 BNC2Q6ZN30 1099 aaPredicted RBP15.83■□□□□ 0.12
CLN3-217ENST00000565354 GK5Q6ZS86 529 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 FBXW8Q8N3Y1 598 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 CPSF7Q8N684 471 aaKnown RBP15.83■□□□□ 0.12
CLN3-217ENST00000565354 COX18Q8N8Q8 333 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 POGLUT1Q8NBL1 392 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 OR4N2Q8NGD1 307 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 DNAJB8Q8NHS0 232 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 ADAMTS15Q8TE58 950 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 PAQR8Q8TEZ7 354 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 TMCO6Q96DC7 493 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 CCDC115Q96NT0 180 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 COL21A1Q96P44 957 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 ADOQ96SZ5 270 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 FAM173AQ9BQD7 235 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 ACTRT3Q9BYD9 372 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 METTL7AQ9H8H3 244 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 KLHL14Q9P2G3 628 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 ITGB1BP2Q9UKP3 347 aa15.83■□□□□ 0.12
CLN3-217ENST00000565354 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 ACOT7O00154 380 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 NR5A2O00482 541 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 SCN2BO60939 215 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 SNRPB2P08579 225 aaKnown RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 ACP2P11117 423 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 HTR1EP28566 365 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 PIGAP37287 484 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 TDGF1P3P51864 188 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 ALDH6A1Q02252 535 aaKnown RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 GAB1Q13480 694 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 ZNF630Q2M218 657 aaPredicted RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 TBCELQ5QJ74 424 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 C6orf10Q5SRN2 563 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 CGB2Q6NT52 195 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 CDC73Q6P1J9 531 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 ZNF621Q6ZSS3 439 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 MSANTD1Q6ZTZ1 278 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 C6orf120Q7Z4R8 191 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 OR2M7Q8NG81 312 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 SPPL2AQ8TCT8 520 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 PIK3R3Q92569 461 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 EFHD2Q96C19 240 aaPredicted RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 GIMAP5Q96F15 307 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 OTUB1Q96FW1 271 aaPredicted RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 RMND5BQ96G75 393 aaPredicted RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 C16orf58Q96GQ5 468 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 ITCHQ96J02 903 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 JSRP1Q96MG2 331 aaPredicted RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 ZNF317Q96PQ6 595 aaPredicted RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 SECISBP2Q96T21 854 aaKnown RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 SLC35A5Q9BS91 424 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 DOHHQ9BU89 302 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 FAM107BQ9H098 131 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 KLRF1Q9NZS2 232 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 SUCOQ9UBS9 1254 aaKnown RBP15.82■□□□□ 0.12
CLN3-217ENST00000565354 PCDHGB3Q9Y5G1 929 aa15.82■□□□□ 0.12
CLN3-217ENST00000565354 OR6C70A6NIJ9 312 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 TFECO14948 347 aaPredicted RBP15.81■□□□□ 0.12
CLN3-217ENST00000565354 UGT2B11O75310 529 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 NKX2-2O95096 273 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 ZNF24P17028 368 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 MATN1P21941 496 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 MASP1P48740 699 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 DNASE1L1P49184 302 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 PNLIPRP2P54317 469 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 POU6F2P78424 691 aaPredicted RBP15.81■□□□□ 0.12
CLN3-217ENST00000565354 DNAJC14Q6Y2X3 702 aaPredicted RBP15.81■□□□□ 0.12
CLN3-217ENST00000565354 CPLX4Q7Z7G2 160 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 MRGPRGQ86SM5 289 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 CLEC4FQ8N1N0 589 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 ZNF808Q8N4W9 903 aaPredicted RBP15.81■□□□□ 0.12
CLN3-217ENST00000565354 SLC16A11Q8NCK7 471 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 VPS33AQ96AX1 596 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 SPDL1Q96EA4 605 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 SLC35A4Q96G79 324 aa15.81■□□□□ 0.12
CLN3-217ENST00000565354 CCDC120Q96HB5 630 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms