RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CDK9P50750 372 aaKnown RBP12.24□□□□□ -0.45
CLK3-216ENST00000564468 GAB1Q13480 694 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 SF3B4Q15427 424 aaKnown RBP eCLIP12.24□□□□□ -0.454e-6■■■□□ 15.4
CLK3-216ENST00000564468 BHLHB9Q6PI77 547 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 ACAD11Q709F0 780 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 CAMKMTQ7Z624 323 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 RIMKLAQ8IXN7 391 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 VPS37AQ8NEZ2 397 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 GPR151Q8TDV0 419 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 ITLN2Q8WWU7 325 aaPredicted RBP12.24□□□□□ -0.45
CLK3-216ENST00000564468 MOAP1Q96BY2 351 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 EFHD2Q96C19 240 aaPredicted RBP12.24□□□□□ -0.45
CLK3-216ENST00000564468 ATP6V1G3Q96LB4 118 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 GNRHR2Q96P88 292 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 DMRTA2Q96SC8 542 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 DUSP26Q9BV47 211 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 DPY30Q9C005 99 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 UBQLN3Q9H347 655 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 RUBCNLQ9H714 662 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 VIPAS39Q9H9C1 493 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 EQTNQ9NQ60 294 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 ZCCHC3Q9NUD5 404 aaKnown RBP12.24□□□□□ -0.45
CLK3-216ENST00000564468 PNPOQ9NVS9 261 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 PCDHGB4Q9UN71 923 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 ABCG2Q9UNQ0 655 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 WIF1Q9Y5W5 379 aa12.24□□□□□ -0.45
CLK3-216ENST00000564468 FAM47E-STBD1D6RA91 191 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 KLF11O14901 512 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 CFLARO15519 480 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 ZNHIT1O43257 154 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 NME6O75414 186 aaPredicted RBP12.23□□□□□ -0.45
CLK3-216ENST00000564468 NKX2-2O95096 273 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 IL33O95760 270 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 KRT16P08779 473 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 ALOX5P09917 674 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 ACVR2AP27037 513 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 PTPN6P29350 595 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 PTGER4P35408 488 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 PTGDSP41222 190 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 TRPC1P48995 793 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 CLNS1AP54105 237 aaKnown RBP12.23□□□□□ -0.45
CLK3-216ENST00000564468 ADORA2A-AS1P86434 159 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 DPY19L1Q2PZI1 675 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 PGS1Q32NB8 556 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 FNDC7Q5VTL7 733 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 DESI1Q6ICB0 168 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 OGFOD2Q6N063 350 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 ZNF585AQ6P3V2 769 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 SPATA19Q7Z5L4 167 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 PLCZ1Q86YW0 608 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 PM20D2Q8IYS1 436 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 OR4N2Q8NGD1 307 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 OR56A1Q8NGH5 318 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 PSMA8Q8TAA3 256 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 SLC9A6Q92581 669 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 RND1Q92730 232 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 HOXB13Q92826 284 aaPredicted RBP12.23□□□□□ -0.45
CLK3-216ENST00000564468 ARL8AQ96BM9 186 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 GALNT9Q9HCQ5 603 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 PNPLA3Q9NST1 481 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 SNX8Q9Y5X2 465 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 MED12Q93074 2177 aa12.23□□□□□ -0.45
CLK3-216ENST00000564468 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 C15orf38-AP3S2A0A0A6YYH1 394 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 ADAM10O14672 748 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 HNRNPRO43390 633 aaKnown RBP12.22□□□□□ -0.45
CLK3-216ENST00000564468 CLDN14O95500 239 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 CYP4B1P13584 511 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 LCN1P31025 176 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 EVI2BP34910 448 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 MAP3K8P41279 467 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 CCT3P49368 545 aaKnown RBP12.22□□□□□ -0.45
CLK3-216ENST00000564468 DIO3P55073 304 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 OCRLQ01968 901 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 SPDYE7PQ495Y7 208 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 EMC4Q5J8M3 183 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 MFSD12Q6NUT3 480 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 B3GNT6Q6ZMB0 384 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 C3P1Q6ZMU1 363 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 KRTCAP2Q8N6L1 136 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 OR8J2Q8NGG1 315 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 OR5M9Q8NGP3 310 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 PIWIL2Q8TC59 973 aaKnown RBP12.22□□□□□ -0.45
CLK3-216ENST00000564468 SFXN5Q8TD22 340 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 RNF138Q8WVD3 245 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 ASB5Q8WWX0 329 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 FAM120BQ96EK7 910 aaKnown RBP12.22□□□□□ -0.45
CLK3-216ENST00000564468 GIMAP5Q96F15 307 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 STACQ99469 402 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 SLC6A15Q9H2J7 730 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 CHST11Q9NPF2 352 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 SIRT3Q9NTG7 399 aaPredicted RBP12.22□□□□□ -0.45
CLK3-216ENST00000564468 FAM120CQ9NX05 1096 aaKnown RBP12.22□□□□□ -0.45
CLK3-216ENST00000564468 GIN1Q9NXP7 522 aa12.22□□□□□ -0.45
CLK3-216ENST00000564468 FAF1Q9UNN5 650 aaPredicted RBP12.22□□□□□ -0.45
CLK3-216ENST00000564468 MRPS18CQ9Y3D5 142 aaKnown RBP12.22□□□□□ -0.45
CLK3-216ENST00000564468 INTS1Q8N201 2190 aaKnown RBP12.22□□□□□ -0.45
CLK3-216ENST00000564468 PKDREJQ9NTG1 2253 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 C2orf72A6NCS6 295 aa12.21□□□□□ -0.45
CLK3-216ENST00000564468 AHRRA9YTQ3 701 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms