RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PLIN3O60664 434 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 PRAMEF2O60811 474 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 PRKRAO75569 313 aaKnown RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 TRMUO75648 421 aaKnown RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 SULT1C4O75897 302 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CCNE2O96020 404 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 RAF1P04049 648 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 GBAP04062 536 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 PCCAP05165 728 aaPredicted RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 KLK3P07288 261 aaPredicted RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 MMP10P09238 476 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 C8orf89P0DMQ9 161 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CD1EP15812 388 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CDH2P19022 906 aaPredicted RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 PAX6P26367 422 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CD27P26842 260 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 EPHX2P34913 555 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CA5AP35218 305 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 DLSTP36957 453 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ARRB1P49407 418 aaPredicted RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 RAB28P51157 221 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 C21orf59P57076 290 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 NUTF2P61970 127 aaKnown RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 RBX1P62877 108 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 IRF8Q02556 426 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 SIGLEC14Q08ET2 396 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 PTP4A2Q12974 167 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 SLAMF1Q13291 335 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ITGADQ13349 1161 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 DNASE1L3Q13609 305 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 FHL3Q13643 280 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 PKP1Q13835 747 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 MESDQ14696 234 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ARL6IP1Q15041 203 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CDK10Q15131 360 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 DEFB115Q30KQ5 88 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 PAN3Q58A45 887 aaKnown RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 AWAT1Q58HT5 328 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 DCAF6Q58WW2 860 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 RAET1LQ5VY80 246 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 NCR3LG1Q68D85 454 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 GRHL2Q6ISB3 625 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 KRTAP5-1Q6L8H4 278 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 UGT3A1Q6NUS8 523 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ZNF544Q6NX49 715 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CYHR1Q6ZMK1 362 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 SLC16A14Q7RTX9 510 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 LACC1Q8IV20 430 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 UBQLNLQ8IYU4 475 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ZFP82Q8N141 532 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 FBXO39Q8N4B4 442 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 L3MBTL4Q8NA19 623 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 GATSQ8NAP1 163 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 CYB561A3Q8NBI2 242 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 OR5T3Q8NGG3 340 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 OR1N1Q8NGS0 311 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 C16orf52Q8NHV5 167 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 TBC1D16Q8TBP0 767 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 SEMA4DQ92854 862 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 SLCO2A1Q92959 643 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 PERPQ96FX8 193 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ZNF333Q96JL9 665 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 GLT1D1Q96MS3 346 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 SLC22A12Q96S37 553 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 NPAS1Q99742 590 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 AIF1LQ9BQI0 150 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 PDCD10Q9BUL8 212 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 DDA1Q9BW61 102 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 YTHDF1Q9BYJ9 559 aaKnown RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 SPRTNQ9H040 489 aaPredicted RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 SLCO5A1Q9H2Y9 848 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 MEAF6Q9HAF1 191 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ZNF160Q9HCG1 818 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ABCB9Q9NP78 766 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 KCNMB3Q9NPA1 279 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ENTPD7Q9NQZ7 604 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 YAE1D1Q9NRH1 226 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS35-205ENST00000563984 MIOSQ9NXC5 875 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ZDHHC7Q9NXF8 308 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 ERAP1Q9NZ08 941 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 EPHA6Q9UF33 1036 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 RSL24D1Q9UHA3 163 aaKnown RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 ZNF225Q9UK10 706 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 PLA2G4CQ9UP65 541 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 POFUT2Q9Y2G5 429 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 KCNIP3Q9Y2W7 256 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 SNX24Q9Y343 169 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 TBL2Q9Y4P3 447 aaKnown RBP4.74□□□□□ -1.65
VPS35-205ENST00000563984 NAV1Q8NEY1 1877 aa4.74□□□□□ -1.65
VPS35-205ENST00000563984 FMN1Q68DA7 1419 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 TSPOAP1O95153 1857 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 A0A0A6YYC8 382 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 TEX13DA0A0J9YY54 714 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 C9orf170A2RU37 121 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 A8MUA0 341 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 G3V2T6 193 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 I3L1I5 382 aaPredicted RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 M0QYV0 167 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 STX16O14662 325 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms