RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 LAMB4A4D0S4 1761 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SEPT4O43236 478 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 PI15O43692 258 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 BNIP3LO60238 219 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 GOT2P00505 430 aaKnown RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 LAMP2P13473 410 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 ACPPP15309 386 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 CD1DP15813 335 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 TMEM11P17152 192 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 KIR2DL3P43628 341 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 C12orf40Q86WS4 652 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 CPNE8Q86YQ8 564 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 RAB24Q969Q5 203 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 DCCP43146 1447 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 C2orf92A0A1B0GVN3 265 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 ARL5CA6NH57 179 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 DBX1A6NMT0 343 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 DIRAS1O95057 198 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 ZNF44P15621 663 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 CNR2P34972 360 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 GABRA2P47869 451 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 STK19P49842 368 aaPredicted RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 UBE2IP63279 158 aaKnown RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 GRB7Q14451 532 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 ARL6IP1Q15041 203 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 ZNF648Q5T619 568 aaPredicted RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 FLAD1Q8NFF5 587 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 GPRC5AQ8NFJ5 357 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 NINQ8N4C6 2090 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 HCRTR2O43614 444 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 KDELR3O43731 214 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 FGF18O76093 207 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 RD3LP0DJH9 198 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SPP1P10451 314 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 NQO2P16083 231 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SSBP1Q04837 148 aaKnown RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 RELQ04864 619 aaPredicted RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 DSC1Q08554 894 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SIAH3Q8IW03 269 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 GLB1L2Q8IW92 636 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 HORMAD2Q8N7B1 307 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 OR4K17Q8NGC6 315 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 OR52E4Q8NGH9 312 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 OR52P1PQ8NH57 321 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 HAS2Q92819 552 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SEMA3CQ99985 751 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SORBS1Q9BX66 1292 aaKnown RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 CHRNA9Q9UGM1 479 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 CA14Q9ULX7 337 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 GPR45Q9Y5Y3 372 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 J3QLW9 94 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SOX14O95416 240 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 CBX7O95931 251 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 TGFB1P01137 390 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 AMY2AP04746 511 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 ZNF19P17023 458 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 ZNF8P17098 575 aaPredicted RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 PBX3P40426 434 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 PRKCZQ05513 592 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 FRG2Q64ET8 278 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 RD3Q7Z3Z2 195 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 KLBQ86Z14 1044 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 TRAM1L1Q8N609 369 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 RASGEF1AQ8N9B8 481 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 PLA2G15Q8NCC3 412 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 OR8S1Q8NH09 359 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 FRG2BQ96QU4 278 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 TDRD3Q9H7E2 651 aaKnown RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 POT1Q9NUX5 634 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 SLC12A8A0AV02 714 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 DUXAA6NLW8 204 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 ZNF736B4DX44 427 aaPredicted RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 GABRPO00591 440 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 PTHP01270 115 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 GDNFP39905 211 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 CLDN8P56748 225 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 CDK5Q00535 292 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 NXNL2Q5VZ03 156 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 MED27Q6P2C8 311 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 CHRDL2Q6WN34 429 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 TAC4Q86UU9 113 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 OR14A16Q8NHC5 309 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 NFKBIDQ8NI38 313 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SLCO4A1Q96BD0 722 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 TAPBPLQ9BX59 468 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 PRDM9Q9NQV7 894 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 TMEM235A6NFC5 223 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 MFSD2BA6NFX1 497 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 ZNF25P17030 456 aaPredicted RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 APEX1P27695 318 aaKnown RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 RPIAP49247 311 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 RASGEF1BQ0VAM2 473 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 UNC50Q53HI1 259 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 TMEM31Q5JXX7 168 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 CLEC12AQ5QGZ9 265 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SPOUT1Q5T280 376 aaKnown RBP5.94□□□□□ -1.46
CLK3-212ENST00000563418 CES4AQ5XG92 561 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 BBS10Q8TAM1 723 aa5.94□□□□□ -1.46
CLK3-212ENST00000563418 SLC35G5Q96KT7 338 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms