RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 PDCD2Q16342 344 aaPredicted RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 TNFAIP8L3Q5GJ75 292 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 DCST1Q5T197 706 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 LRIG3Q6UXM1 1119 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 MEX3BQ6ZN04 569 aaKnown RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 CROCCP2Q86T23 111 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 ZNF781Q8N8C0 355 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 NUP43Q8NFH3 380 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 NUDT8Q8WV74 236 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 PIK3R3Q92569 461 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 PAIP2Q9BPZ3 127 aaKnown RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 LMF2Q9BU23 707 aaKnown RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 C3orf14Q9HBI5 128 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 ACSS1Q9NUB1 689 aaPredicted RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 ATP6V1HQ9UI12 483 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 FBXL2Q9UKC9 423 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 MRTO4Q9UKD2 239 aaKnown RBP14.26□□□□□ -0.13
VPS39-203ENST00000561797 PCDHGB3Q9Y5G1 929 aa14.26□□□□□ -0.13
VPS39-203ENST00000561797 EMC8O43402 210 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 TOXO94900 526 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 ZWINTO95229 277 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 IL33O95760 270 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 IFI6P09912 130 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 DHRS4L1P0CG22 281 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 LAMP1P11279 417 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 EVI2BP34910 448 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 PTGER4P35408 488 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 GCKP35557 465 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 SLC1A6P48664 564 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 GAS1P54826 345 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 STX5Q13190 355 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 ACSF3Q4G176 576 aaPredicted RBP14.25□□□□□ -0.13
VPS39-203ENST00000561797 NHSL2Q5HYW2 709 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 LIX1LQ8IVB5 337 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 PM20D2Q8IYS1 436 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 ANKRD42Q8N9B4 389 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 CEP70Q8NHQ1 597 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 FBXO30Q8TB52 745 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 GPR151Q8TDV0 419 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 SLC9A6Q92581 669 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 PGM2Q96G03 612 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 RMND5BQ96G75 393 aaPredicted RBP14.25□□□□□ -0.13
VPS39-203ENST00000561797 WDYHV1Q96HA8 205 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 OR2B2Q9GZK3 357 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 C20orf27Q9GZN8 174 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 TAS2R10Q9NYW0 307 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 PPP4R1LQ9P1A2 415 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 DKKL1Q9UK85 242 aa14.25□□□□□ -0.13
VPS39-203ENST00000561797 A0A1W2PRB8 838 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 FADS1O60427 444 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 EPPINO95925 133 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 ACTL6AO96019 429 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 ACP2P11117 423 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 DDX5P17844 614 aaKnown RBP14.24□□□□□ -0.13
VPS39-203ENST00000561797 SRD5A2P31213 254 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 RPL3P39023 403 aaKnown RBP14.24□□□□□ -0.13
VPS39-203ENST00000561797 PSMD4P55036 377 aaKnown RBP14.24□□□□□ -0.13
VPS39-203ENST00000561797 CPTPQ5TA50 214 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 RIPPLY2Q5TAB7 128 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 HHATQ5VTY9 493 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 SEM1Q6ZVN7 128 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 GDF7Q7Z4P5 450 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 GALNT10Q86SR1 603 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 IFNEQ86WN2 208 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 TRIM42Q8IWZ5 723 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 KRTCAP2Q8N6L1 136 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 TNIP2Q8NFZ5 429 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 OR4K17Q8NGC6 315 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 RNF138Q8WVD3 245 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 OTUB1Q96FW1 271 aaPredicted RBP14.24□□□□□ -0.13
VPS39-203ENST00000561797 TRIB1Q96RU8 372 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 YIPF4Q9BSR8 244 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 TRIM8Q9BZR9 551 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 PRDM14Q9GZV8 571 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 ENKD1Q9H0I2 346 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 DSN1Q9H410 356 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 NPDC1Q9NQX5 325 aaPredicted RBP14.24□□□□□ -0.13
VPS39-203ENST00000561797 EIF3LQ9Y262 564 aaKnown RBP14.24□□□□□ -0.13
VPS39-203ENST00000561797 RAP2CQ9Y3L5 183 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 ACTL7BQ9Y614 415 aa14.24□□□□□ -0.13
VPS39-203ENST00000561797 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 TTC36A6NLP5 189 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 B4DXG7 233 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 FAM47E-STBD1D6RA91 191 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 ERLIN1O75477 346 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 NKX2-2O95096 273 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 KCNH1O95259 989 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 UTS2O95399 124 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 IGKV1D-16P01601 117 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 G6PDP11413 515 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 DPP4P27487 766 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 STARP49675 285 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 CLK3P49761 638 aaKnown RBP14.23□□□□□ -0.13
VPS39-203ENST00000561797 RPL14P50914 215 aaKnown RBP14.23□□□□□ -0.13
VPS39-203ENST00000561797 SRYQ05066 204 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 TFF3Q07654 80 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 MAD2L1Q13257 205 aaPredicted RBP14.23□□□□□ -0.13
VPS39-203ENST00000561797 STX3Q13277 289 aa14.23□□□□□ -0.13
VPS39-203ENST00000561797 SF3B4Q15427 424 aaKnown RBP eCLIP14.23□□□□□ -0.13
VPS39-203ENST00000561797 VPS26BQ4G0F5 336 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms