RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ZNF655Q8N720 491 aaPredicted RBP13.97□□□□□ -0.17
CUX1-215ENST00000556210 OR56A1Q8NGH5 318 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 OR5M3Q8NGP4 307 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 ZNF563Q8TA94 476 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 RFKQ969G6 155 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 HHIPL1Q96JK4 782 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 GPR34Q9UPC5 381 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 C5orf42Q9H799 3197 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 TRBV5-3A0A0A0MS03 114 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 EMC8O43402 210 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 RAB36O95755 333 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 AHCYP23526 432 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 MAOBP27338 520 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 CDC20Q12834 499 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 HYAL4Q2M3T9 481 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 BTBD16Q32M84 506 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 TMEM240Q5SV17 173 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 ACSM5Q6NUN0 579 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 ANKK1Q8NFD2 765 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 CD180Q99467 661 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 APOOQ9BUR5 198 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 ZNF226Q9NYT6 803 aa13.97□□□□□ -0.17
CUX1-215ENST00000556210 C1orf226A1L170 272 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 ZC3H12DA2A288 527 aaKnown RBP13.96□□□□□ -0.17
CUX1-215ENST00000556210 DUXAA6NLW8 204 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 ELAVL4P26378 380 aaKnown RBP13.96□□□□□ -0.17
CUX1-215ENST00000556210 PYCR1P32322 319 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 IL20RBQ6UXL0 311 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 CCDC71Q8IV32 467 aaPredicted RBP13.96□□□□□ -0.17
CUX1-215ENST00000556210 OR8K3Q8NH51 312 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 ASB16Q96NS5 453 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 CLEC4MQ9H2X3 399 aaPredicted RBP13.96□□□□□ -0.17
CUX1-215ENST00000556210 UCKL1Q9NWZ5 548 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 PCDHGB1Q9Y5G3 927 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 HMGN4O00479 90 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 PCSK2P16519 638 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 FUT1P19526 365 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 MMP11P24347 488 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 UGT2B10P36537 528 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 FGD2Q7Z6J4 655 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 COQ10AQ96MF6 247 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 AMDHD1Q96NU7 426 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 NKX2-4Q9H2Z4 354 aa13.96□□□□□ -0.17
CUX1-215ENST00000556210 A0A1W2PR48 441 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 SSX4O60224 188 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 SDC3O75056 442 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 HLA-DQA1Q5Y7H0 255 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 FRRS1Q6ZNA5 592 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 NOXA1Q86UR1 476 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 NRROSQ86YC3 692 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 TMIEQ8NEW7 156 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 SUN3Q8TAQ9 357 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 RAB7BQ96AH8 199 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 NECTIN4Q96NY8 510 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 PNO1Q9NRX1 252 aaKnown RBP13.96□□□□□ -0.18
CUX1-215ENST00000556210 CCDC59Q9P031 241 aaKnown RBP13.96□□□□□ -0.18
CUX1-215ENST00000556210 A0A0G2JMZ2 1700 aa13.96□□□□□ -0.18
CUX1-215ENST00000556210 TRAV6A0A075B6T7 132 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 C12orf71A8MTZ7 269 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 SGK494L7N484 410 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 SDHBP21912 280 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 PTPN6P29350 595 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 GXYLT1Q4G148 440 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 KIAA1211LQ6NV74 962 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 MZT2AQ6P582 158 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 RTL4Q6ZR62 310 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 OR5T3Q8NGG3 340 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 OR7D2Q96RA2 312 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 ING4Q9UNL4 249 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 MAU2Q9Y6X3 613 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 ORC5O43913 435 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 NTSR1P30989 418 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 LRRC25Q8N386 305 aaPredicted RBP13.95□□□□□ -0.18
CUX1-215ENST00000556210 KLHL36Q8N4N3 616 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 OR52A5Q9H2C5 316 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 DDX31Q9H8H2 851 aaKnown RBP13.95□□□□□ -0.18
CUX1-215ENST00000556210 GPATCH2Q9NW75 528 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 MRPL15Q9P015 296 aaKnown RBP13.95□□□□□ -0.18
CUX1-215ENST00000556210 UNC80Q8N2C7 3258 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 IQCMA0A1B0GVH7 501 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 TCRBV21S2A2A0A5A6 115 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 MOSPD3O75425 235 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 MPEG1Q2M385 716 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 FLYWCH1Q4VC44 716 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 SLC36A4Q6YBV0 504 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 NKAIN4Q8IVV8 208 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 PEX11GQ96HA9 241 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 FYTTD1Q96QD9 318 aaKnown RBP13.95□□□□□ -0.18
CUX1-215ENST00000556210 SPATA9Q9BWV2 254 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 ZNF717Q9BY31 904 aaPredicted RBP13.95□□□□□ -0.18
CUX1-215ENST00000556210 CALML5Q9NZT1 146 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 NLKQ9UBE8 527 aa13.95□□□□□ -0.18
CUX1-215ENST00000556210 TRAV27A0A087WT01 109 aa13.94□□□□□ -0.18
CUX1-215ENST00000556210 AGAP14A8MT82 685 aa13.94□□□□□ -0.18
CUX1-215ENST00000556210 C5AR1P21730 350 aa13.94□□□□□ -0.18
CUX1-215ENST00000556210 RPS19P39019 145 aaKnown RBP13.94□□□□□ -0.18
CUX1-215ENST00000556210 XCR1P46094 333 aa13.94□□□□□ -0.18
CUX1-215ENST00000556210 PUM1Q14671 1186 aaKnown RBP eCLIP13.94□□□□□ -0.183e-7■■□□□ 11.4
CUX1-215ENST00000556210 OAFQ86UD1 273 aa13.94□□□□□ -0.18
CUX1-215ENST00000556210 OR4K13Q8NH42 304 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms