RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 MCFD2Q8NI22 146 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 OR7D2Q96RA2 312 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 CDX2Q99626 313 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-212ENST00000554467 NMNAT1Q9HAN9 279 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-212ENST00000554467 DAPP1Q9UN19 280 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 SPEF1Q9Y4P9 236 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 A0A0J9YY10 115 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 OR5K3A6NET4 321 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 CLDN24A6NM45 220 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 C10orf142B7Z368 130 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 TNFSF14O43557 240 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 FCMRO60667 390 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 RDH16O75452 317 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 GASTP01350 101 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 FHP07954 510 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 BCKDHBP21953 392 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 CD38P28907 300 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 SERPINB10P48595 397 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 MRPS15P82914 257 aaKnown RBP10.94□□□□□ -0.66
SHMT2-212ENST00000554467 TNFRSF17Q02223 184 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 CCNJQ5T5M9 372 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 TCTN3Q6NUS6 607 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 ARMC6Q6NXE6 501 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 PRSS48Q7RTY5 328 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 OR9A4Q8NGU2 314 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 APOBEC4Q8WW27 367 aaKnown RBP10.94□□□□□ -0.66
SHMT2-212ENST00000554467 POP5Q969H6 163 aaKnown RBP10.94□□□□□ -0.66
SHMT2-212ENST00000554467 NEDD4LQ96PU5 975 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 PHOX2BQ99453 314 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 SDHCQ99643 169 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-212ENST00000554467 COQ7Q99807 217 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 UCKL1Q9NWZ5 548 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 MKLN1Q9UL63 735 aa10.94□□□□□ -0.66
SHMT2-212ENST00000554467 KIR2DS5A0A0G2JLQ3 304 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 A0A0G2JNG1 304 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 KIR2DS3K7RE56 304 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 DBTP11182 482 aaKnown RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 TGFBR2P37173 567 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 KHKP50053 298 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ST13P50502 369 aaKnown RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 OR2B6P58173 313 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 TUBA1BP68363 451 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 KIR2DS5Q14953 304 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ZFP69Q49AA0 526 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 KLHL17Q6TDP4 642 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 TUBA1AQ71U36 451 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 OOSP2Q86WS3 158 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 VRK2Q86Y07 508 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 CAMKVQ8NCB2 501 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 OR5H6Q8NGV6 325 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 NT5CQ8TCD5 201 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ZNF607Q96SK3 696 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 MAP3K3Q99759 626 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ADAP2Q9NPF8 381 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 THSD1Q9NS62 852 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 NDRG4Q9ULP0 352 aaKnown RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 TPRKBQ9Y3C4 175 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 FGF17O60258 216 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 EPPINO95925 133 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ITGA2P17301 1181 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 HOXB6P17509 224 aaKnown RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 CBLP22681 906 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 C21orf33P30042 268 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 PPP2R1BP30154 601 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 KRT20P35900 424 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 DMWDQ09019 674 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ERV3-1Q14264 604 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 MLC1Q15049 377 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 LRRC25Q8N386 305 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 SETD9Q8NE22 299 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 APOL4Q9BPW4 351 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 LYARQ9NX58 379 aaKnown RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 NTNG1Q9Y2I2 539 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 GPR55Q9Y2T6 319 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 PCDHGA6Q9Y5G7 932 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 EMC8O43402 210 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 DNAJB5O75953 348 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 MED26O95402 600 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ZIC2O95409 532 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 HTR2BP41595 481 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 OR3A3P47888 321 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 RFX3P48380 749 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 KCNJ5P48544 419 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 GFERP55789 205 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 PRR5P85299 388 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 MAT1AQ00266 395 aaKnown RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 IRF3Q14653 427 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 EXOSC7Q15024 291 aaKnown RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ZC3H12BQ5HYM0 836 aaKnown RBP10.93□□□□□ -0.66
SHMT2-212ENST00000554467 TSSK4Q6SA08 328 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ABHD13Q7L211 337 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ENTHD1Q8IYW4 607 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 ARL14Q8N4G2 192 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 OR4K14Q8NGD5 310 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 OR6T1Q8NGN1 323 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 CDS1Q92903 461 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 SERINC2Q96SA4 455 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 HCN3Q9P1Z3 774 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 RNF6Q9Y252 685 aa10.93□□□□□ -0.66
SHMT2-212ENST00000554467 MN1Q10571 1320 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms