RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 OR5M10Q6IEU7 315 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 UFSP1Q6NVU6 142 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 IGFL2Q6UWQ7 119 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 FAM159AQ6UWV7 190 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 KRTAP5-5Q701N2 237 aaPredicted RBP2.16□□□□□ -2.06
VRK1-202ENST00000553683 GET4Q7L5D6 327 aaPredicted RBP2.16□□□□□ -2.06
VRK1-202ENST00000553683 BNIPLQ7Z465 357 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 NET1Q7Z628 596 aaPredicted RBP2.16□□□□□ -2.06
VRK1-202ENST00000553683 PARGQ86W56 976 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 PPP1R27Q86WC6 154 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 IQCA1Q86XH1 822 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 OR4F17Q8NGA8 305 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 MCHR2Q969V1 340 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 SLC25A38Q96DW6 304 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 SLC35E1Q96K37 410 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 ZNF285Q96NJ3 590 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 OR4F4Q96R69 305 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 EBF4Q9BQW3 602 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 WRAP53Q9BUR4 548 aaKnown RBP2.16□□□□□ -2.06
VRK1-202ENST00000553683 CARD6Q9BX69 1037 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 TM2D1Q9BX74 207 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 NACA2Q9H009 215 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 ABCG4Q9H172 646 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 ABCG8Q9H221 673 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 MID1IP1Q9NPA3 183 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 FAM114A2Q9NRY5 505 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 COPS7AQ9UBW8 275 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 FZR1Q9UM11 496 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 EXOSC1Q9Y3B2 195 aaKnown RBP2.16□□□□□ -2.06
VRK1-202ENST00000553683 SRCAPQ6ZRS2 3230 aa2.16□□□□□ -2.06
VRK1-202ENST00000553683 CDC42BPBQ9Y5S2 1711 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 E9PMD0 336 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 PANO1I0J062 215 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 SGK494L7N484 410 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 HTATSF1O43719 755 aaKnown RBP2.15□□□□□ -2.07
VRK1-202ENST00000553683 HSF2BPO75031 334 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 SDC3O75056 442 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 NOL4O94818 638 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 NDUFA7O95182 113 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 CHRNA1P02708 482 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 HOXD10P28358 340 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 CDH5P33151 784 aaPredicted RBP2.15□□□□□ -2.07
VRK1-202ENST00000553683 TRPC1P48995 793 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 HNRNPFP52597 415 aaKnown RBP2.15□□□□□ -2.07
VRK1-202ENST00000553683 UCNP55089 124 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 OTUD4Q01804 1114 aaKnown RBP2.15□□□□□ -2.07
VRK1-202ENST00000553683 UBXN1Q04323 297 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 ZP4Q12836 540 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 CMPK2Q5EBM0 449 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 IGFL3Q6UXB1 125 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 MCOLN2Q8IZK6 566 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 LRRC17Q8N6Y2 441 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 CSNK1A1LQ8N752 337 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 BBS1Q8NFJ9 593 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 ST7LQ8TDW4 575 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 ADAMTS16Q8TE57 1224 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 FGGYQ96C11 551 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 DTD2Q96FN9 168 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 CCDC43Q96MW1 224 aaKnown RBP2.15□□□□□ -2.07
VRK1-202ENST00000553683 SMIM14Q96QK8 99 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 TSSK1BQ9BXA7 367 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 CARD9Q9H257 536 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 MEPEQ9NQ76 525 aaPredicted RBP2.15□□□□□ -2.07
VRK1-202ENST00000553683 BCAP29Q9UHQ4 241 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 SMC3Q9UQE7 1217 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 EIF3LQ9Y262 564 aaKnown RBP2.15□□□□□ -2.07
VRK1-202ENST00000553683 TDRKHQ9Y2W6 561 aaKnown RBP2.15□□□□□ -2.07
VRK1-202ENST00000553683 L3MBTL1Q9Y468 752 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 PPIAL4AQ9Y536 164 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 FKBP7Q9Y680 259 aa2.15□□□□□ -2.07
VRK1-202ENST00000553683 CCDC69A6NI79 296 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 H3BTX0 84 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 ZNF861PO60384 105 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 KINO60870 393 aaKnown RBP2.14□□□□□ -2.07
VRK1-202ENST00000553683 PGK1P00558 417 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 CXCL10P02778 98 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 IGFBP1P08833 259 aaPredicted RBP2.14□□□□□ -2.07
VRK1-202ENST00000553683 ABHD2P08910 425 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 GNSP15586 552 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 GABRR1P24046 479 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 MRPS6P82932 125 aaKnown RBP2.14□□□□□ -2.07
VRK1-202ENST00000553683 ZNF45Q02386 682 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 RPA4Q13156 261 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 ELAVL3Q14576 367 aaKnown RBP2.14□□□□□ -2.07
VRK1-202ENST00000553683 KCNJ11Q14654 390 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 IL23RQ5VWK5 629 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 ZNF57Q68EA5 555 aaPredicted RBP2.14□□□□□ -2.07
VRK1-202ENST00000553683 HACD2Q6Y1H2 254 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 STAC2Q6ZMT1 411 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 TRPM8Q7Z2W7 1104 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 TMEM179BQ7Z7N9 219 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 ERI1Q8IV48 349 aaKnown RBP2.14□□□□□ -2.07
VRK1-202ENST00000553683 CNTN4Q8IWV2 1026 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 CCDC36Q8IYA8 594 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 CENPSQ8N2Z9 138 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 Q8N9L7 120 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 WDR36Q8NI36 951 aaKnown RBP2.14□□□□□ -2.07
VRK1-202ENST00000553683 PHYHIPQ92561 330 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 TMEM80Q96HE8 168 aa2.14□□□□□ -2.07
VRK1-202ENST00000553683 ZNF560Q96MR9 790 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms