RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 MGAMO43451 1857 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 A0A0J9YWU9 116 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 KRTAP16-1A8MUX0 517 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 E9PQ18 207 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 SORBS2O94875 1100 aaKnown RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 PROS1P07225 676 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 NPY2RP49146 381 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 VEGFCP49767 419 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 RIDAP52758 137 aaKnown RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 VGLL4Q14135 290 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 ZSWIM7Q19AV6 140 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 SHROOM1Q2M3G4 852 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 GLIPR1L2Q4G1C9 344 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 IL23RQ5VWK5 629 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 WDR25Q64LD2 544 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 CWC27Q6UX04 472 aaKnown RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 ASCL5Q7RTU5 278 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 FAM71CQ8NEG0 241 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 CHPT1Q8WUD6 406 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 PHYHIPQ92561 330 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 TAF15Q92804 592 aaKnown RBP eCLIP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 ZNF689Q96CS4 500 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 ZBED3Q96IU2 234 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 ATF6BQ99941 703 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 RBM4BQ9BQ04 359 aaKnown RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 CHCHD5Q9BSY4 110 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 CABLES2Q9BTV7 478 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 UPF3BQ9BZI7 483 aaKnown RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 OCR1Q9BZK8 76 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 NMNAT2Q9BZQ4 307 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 TRIM15Q9C019 465 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 NACA2Q9H009 215 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 PANK3Q9H999 370 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 Q9HAA7 133 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 CLIP2Q9UDT6 1046 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 SPATA2Q9UM82 520 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 CLCA3PQ9Y6N3 262 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 LRRC37A2A6NM11 1700 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 DDX60Q8IY21 1712 aaKnown RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 KIF26BQ2KJY2 2108 aa3.97□□□□□ -1.77
LIMA1-205ENST00000550592 SETXQ7Z333 2677 aaKnown RBP3.97□□□□□ -1.77
LIMA1-205ENST00000550592 A0A1W2PPR1 153 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 DUSP11O75319 330 aaKnown RBP3.96□□□□□ -1.78
LIMA1-205ENST00000550592 UFL1O94874 794 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 CCDC159P0C7I6 412 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 GP9P14770 177 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 ARF4P18085 180 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-205ENST00000550592 DNAJB1P25685 340 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 PRDX6P30041 224 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 CD86P42081 329 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 ATP4BP51164 291 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 PAX8Q06710 450 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 NME3Q13232 169 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 PPIL2Q13356 520 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 PDIA5Q14554 519 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 EMC2Q15006 297 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 SIX1Q15475 284 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-205ENST00000550592 INAQ16352 499 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 HKDC1Q2TB90 917 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 AGKQ53H12 422 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 ZCCHC12Q6PEW1 402 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 TMEM26Q6ZUK4 368 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 CCDC71Q8IV32 467 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-205ENST00000550592 CCDC51Q96ER9 411 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 VGLL1Q99990 258 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 HSD17B14Q9BPX1 270 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 NDUFAF3Q9BU61 184 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 CCDC28BQ9BUN5 200 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 RAB11FIP5Q9BXF6 653 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 STARD5Q9NSY2 213 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 SOHLH2Q9NX45 425 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 ACTR3BQ9P1U1 418 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 MIOXQ9UGB7 285 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 IL20RAQ9UHF4 553 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 ZNF175Q9Y473 711 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 AUP1Q9Y679 476 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 MTCH2Q9Y6C9 303 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 BRWD1Q9NSI6 2320 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 GVINP1Q7Z2Y8 2422 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 SPTBN2O15020 2390 aa3.96□□□□□ -1.78
LIMA1-205ENST00000550592 MAP3K15Q6ZN16 1313 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 UBN2Q6ZU65 1347 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 PLXNA1Q9UIW2 1896 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 UBR2Q8IWV8 1755 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 DUOX1Q9NRD9 1551 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 IGKV3D-15A0A087WSY6 115 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 A0A0A6YYD4 124 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 RNF212BA8MTL3 300 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 ADAM12O43184 909 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 TXNL1O43396 289 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 BUB1O43683 1085 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 ZCCHC18P0CG32 403 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 LMO2P25791 158 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 TMOD1P28289 359 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 PTPN4P29074 926 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 OXTRP30559 389 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 TRIM23P36406 574 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 ETV5P41161 510 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 SLC1A4P43007 532 aa3.95□□□□□ -1.78
LIMA1-205ENST00000550592 MAGEA4P43358 317 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms