RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CLK3	P49761	638 aa	Known RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	PNLIPRP2	P54317	469 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	LIPE	Q05469	1076 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	GABPB1	Q06547	395 aa	Predicted RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	BNIP1	Q12981	228 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	GPR68	Q15743	365 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	SYPL1	Q16563	259 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	ZNF791	Q3KP31	576 aa	Predicted RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	ARHGAP11B	Q3KRB8	267 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	LACTB2	Q53H82	288 aa	Predicted RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	EXOSC6	Q5RKV6	272 aa	Known RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC22A10	Q63ZE4	541 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	C6orf89	Q6UWU4	347 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	OLIG3	Q7RTU3	272 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC15A3	Q8IY34	581 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	PGAM4	Q8N0Y7	254 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	ANKFN1	Q8N957	763 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	RBM15B	Q8NDT2	890 aa	Known RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	CATSPER1	Q8NEC5	780 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	OR10G3	Q8NGC4	313 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	FBXO27	Q8NI29	283 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	NFKBID	Q8NI38	313 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	TTC9	Q92623	222 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	HAS2	Q92819	552 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	MAL2	Q969L2	176 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	SGCZ	Q96LD1	299 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	TRNT1	Q96Q11	434 aa	Known RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	CDRT15	Q96T59	188 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	SDF2	Q99470	211 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	GPATCH1	Q9BRR8	931 aa	Known RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	ADNP	Q9H2P0	1102 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	KAT8	Q9H7Z6	458 aa	Known RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	METTL7A	Q9H8H3	244 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	SPAG4	Q9NPE6	437 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	TIMMDC1	Q9NPL8	285 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	KLHL1	Q9NR64	748 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	RYDEN	Q9NUL5	291 aa	Known RBP	9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	CMTM6	Q9NX76	183 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	TP53TG5	Q9Y2B4	290 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	WDR45	Q9Y484	360 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	GMEB1	Q9Y692	573 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	ASPM	Q8IZT6	3477 aa		9.35	□□□□□ -0.91
CPSF7-221	ENST00000543545	CELSR3	Q9NYQ7	3312 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	PTPRQ	Q9UMZ3	2332 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	DMXL2	Q8TDJ6	3036 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	PCSK5	Q92824	1860 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	NPIPA5	A0A0B4J1W7	369 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	NPIPA7	E9PJI5	369 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545		G3V3Y1	287 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545		K7EM74	188 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	CDK2AP1	O14519	115 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	GSTA4	O15217	222 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	TSPAN2	O60636	221 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	FCMR	O60667	390 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	UGT2B11	O75310	529 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	GMNN	O75496	209 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	TNFRSF21	O75509	655 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC25A12	O75746	678 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	H6PD	O95479	791 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	PDGFA	P04085	211 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545		P04436	131 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	TFPT	P0C1Z6	253 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	NPIPA8	P0DM63	369 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	SFTPC	P11686	197 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	RASSF2	P50749	326 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	CRISP3	P54108	245 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	CDK6	Q00534	326 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	CHRNE	Q04844	493 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	SCARB2	Q14108	478 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	NTRK2	Q16620	822 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	ZNF630	Q2M218	657 aa	Predicted RBP	9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	FLYWCH1	Q4VC44	716 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	DESI1	Q6ICB0	168 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC25A25	Q6KCM7	469 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	HEPHL1	Q6MZM0	1159 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	IGFL2	Q6UWQ7	119 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	LYPD8	Q6UX82	237 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	BNC2	Q6ZN30	1099 aa	Predicted RBP	9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	MDGA2	Q7Z553	956 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	SERPINA11	Q86U17	422 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	C10orf111	Q8N326	155 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	RNF148	Q8N7C7	305 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	ZNF614	Q8N883	585 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	C11orf65	Q8NCR3	313 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	CHDH	Q8NE62	594 aa	Predicted RBP	9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	OR2T12	Q8NG77	320 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	FAM110B	Q8TC76	370 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	SLC38A5	Q8WUX1	472 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	TMEM19	Q96HH6	336 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	KCTD14	Q9BQ13	255 aa	Predicted RBP	9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	TBL1XR1	Q9BZK7	514 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	HOXD1	Q9GZZ0	328 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	RNF32	Q9H0A6	362 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	A4GALT	Q9NPC4	353 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	SACM1L	Q9NTJ5	587 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	FBXO34	Q9NWN3	711 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	KLRF1	Q9NZS2	232 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	CALML5	Q9NZT1	146 aa		9.34	□□□□□ -0.91
CPSF7-221	ENST00000543545	TUBD1	Q9UJT1	453 aa		9.34	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms