RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SERPINI1Q99574 410 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 GPR87Q9BY21 358 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ROGDIQ9GZN7 287 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 KLHL31Q9H511 634 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 AKIRIN1Q9H9L7 192 aaPredicted RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 NMRK1Q9NWW6 199 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 TRPC4Q9UBN4 977 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF282Q9UDV7 671 aaPredicted RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF225Q9UK10 706 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 PADI2Q9Y2J8 665 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 MRPS2Q9Y399 296 aaKnown RBP4.78□□□□□ -1.64
CLIP1-217ENST00000543205 NAALAD2Q9Y3Q0 740 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 SPTA1P02549 2419 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 IGSF10Q6WRI0 2623 aa4.78□□□□□ -1.64
CLIP1-217ENST00000543205 TMEM114B3SHH9 223 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SAP18O00422 153 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 DYNC1I1O14576 645 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SPRY1O43609 319 aaPredicted RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 GALR3O60755 368 aaPredicted RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 RDH16O75452 317 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SEC24DO94855 1032 aaPredicted RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 DDAH2O95865 285 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ONECUT2O95948 504 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 CHEK2O96017 543 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 PDYNP01213 254 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 DBHP09172 617 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 RAB40ALP0C0E4 278 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 UROSP10746 265 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 LIFP15018 202 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ITGAXP20702 1163 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 AGAP20933 346 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 BGNP21810 368 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 PTPN4P29074 926 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 HNRNPH1P31943 449 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 MC5RP33032 325 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 MSX2P35548 267 aaPredicted RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 TAGLN2P37802 199 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SLC15A1P46059 708 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SLC1A6P48664 564 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ABCE1P61221 599 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ROM1Q03395 351 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 STX3Q13277 289 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 CUL3Q13618 768 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SNTB1Q13884 538 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 NCF4Q15080 339 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 AP5B1Q2VPB7 878 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ADPRMQ3LIE5 342 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ARL13AQ5H913 290 aaPredicted RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 KHDRBS2Q5VWX1 349 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 FAM198BQ6UWH4 519 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ZNF517Q6ZMY9 492 aaPredicted RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 PRSS41Q7RTY9 318 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 TMEM200AQ86VY9 491 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 RNF175Q8N4F7 328 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ENDOVQ8N8Q3 282 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 DYDC1Q8WWB3 177 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 FKBP10Q96AY3 582 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 DGAT2Q96PD7 388 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 KCNA7Q96RP8 456 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 INTS14Q96SY0 518 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 FOXB1Q99853 325 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SRSF8Q9BRL6 282 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SOX7Q9BT81 388 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 TBCDQ9BTW9 1192 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 MS4A8Q9BY19 250 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SLC5A7Q9GZV3 580 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 OR51B5Q9H339 312 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 MKKSQ9NPJ1 570 aaPredicted RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 FARSBQ9NSD9 589 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 PSD3Q9NYI0 1048 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 AHSPQ9NZD4 102 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 HCN3Q9P1Z3 774 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SLC12A4Q9UP95 1085 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 FARSAQ9Y285 508 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 FIS1Q9Y3D6 152 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 TIMM22Q9Y584 194 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SNRNP200O75643 2136 aaKnown RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 A0A0G2JN53 185 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 OR14I1A6ND48 311 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ZNF860A6NHJ4 632 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 PSMD12O00232 456 aaPredicted RBP4.77□□□□□ -1.65
CLIP1-217ENST00000543205 AZIN1O14977 448 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 LDLRAD4O15165 306 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 CHST10O43529 356 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 MPIG6BO95866 241 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 CHRNGP07510 517 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SMIM10L1P0DMW3 83 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 CHN1P15882 459 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 DDCP20711 480 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 IL10P22301 178 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 TTKP33981 857 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 FOLR3P41439 243 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 CASP3P42574 277 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 SSR2P43308 183 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 PITPNBP48739 271 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 UCNP55089 124 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 MTTPP55157 894 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 NME5P56597 212 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 ERVFRD-1P60508 538 aa4.77□□□□□ -1.65
CLIP1-217ENST00000543205 OLR1P78380 273 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms