RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 DSPPQ9NZW4 1301 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 UNC13CQ8NB66 2214 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 TCRBV21S2A2A0A5A6 115 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 A8MVJ9 347 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 HRKO00198 91 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 PLRG1O43660 514 aaKnown RBP15.81■□□□□ 0.12
USP28-208ENST00000540438 PRICKLE3O43900 615 aaPredicted RBP15.81■□□□□ 0.12
USP28-208ENST00000540438 CTHP32929 405 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 FRKP42685 505 aaPredicted RBP15.81■□□□□ 0.12
USP28-208ENST00000540438 NDUFAF6Q330K2 333 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 CRTC2Q53ET0 693 aaPredicted RBP15.81■□□□□ 0.12
USP28-208ENST00000540438 OR13H1Q8NG92 308 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 OR4N2Q8NGD1 307 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 OR8J1Q8NGP2 316 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 OR51A7Q8NH64 312 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 FCGR1BQ92637 280 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 POP5Q969H6 163 aaKnown RBP15.81■□□□□ 0.12
USP28-208ENST00000540438 BEX2Q9BXY8 128 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 WSB2Q9NYS7 404 aaPredicted RBP15.81■□□□□ 0.12
USP28-208ENST00000540438 FBXL4Q9UKA2 621 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 REM1O75628 298 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 CLUP10909 449 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 DRD2P14416 443 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 MAOBP27338 520 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 PRR5P85299 388 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 ASPGQ86U10 573 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 GLCCI1Q86VQ1 547 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 HOMEZQ8IX15 550 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 KBTBD8Q8NFY9 601 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 OR4Q3Q8NH05 313 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 MMP27Q9H306 513 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 COMMD3Q9UBI1 195 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 WDR45Q9Y484 360 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 PCDHGB6Q9Y5F9 930 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 PIAS3Q9Y6X2 628 aa15.81■□□□□ 0.12
USP28-208ENST00000540438 GXYLT2A0PJZ3 443 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 LRRN3E7EW58 273 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 EMC8O43402 210 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 FGF17O60258 216 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 DPM1O60762 260 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 CT62P0C5K7 136 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 TSPAN19P0C672 248 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 UGT2B7P16662 529 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 RCVRNP35243 200 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 VASPP50552 380 aaPredicted RBP15.8■□□□□ 0.12
USP28-208ENST00000540438 MAT1AQ00266 395 aaKnown RBP15.8■□□□□ 0.12
USP28-208ENST00000540438 CCBE1Q6UXH8 406 aaPredicted RBP15.8■□□□□ 0.12
USP28-208ENST00000540438 Q6ZSR6 202 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 NUDT18Q6ZVK8 323 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 GATAD2AQ86YP4 633 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 PHC2Q8IXK0 858 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 OR51G2Q8NGK0 314 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 TEX47Q8TBZ9 253 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 ZNF681Q96N22 645 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 PTCHD1Q96NR3 888 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 LRRN3Q9H3W5 708 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 A0A1W2PPK0 400 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 CD8B2A6NJW9 211 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 CD8BP10966 210 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 CSTF2P33240 577 aaKnown RBP eCLIP15.8■□□□□ 0.12
USP28-208ENST00000540438 HSD17B2P37059 387 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 CSNK2BP67870 215 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 BAK1Q16611 211 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 GDPD3Q7L5L3 318 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 HCAR1Q9BXC0 346 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 TPSD1Q9BZJ3 242 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 TBCCD1Q9NVR7 557 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 HRASLS2Q9NWW9 162 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 CLEC1BQ9P126 229 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 CLEC4AQ9UMR7 237 aa15.8■□□□□ 0.12
USP28-208ENST00000540438 A6NL46 340 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 CELP19835 753 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 PSMA1P25786 263 aaKnown RBP15.79■□□□□ 0.12
USP28-208ENST00000540438 CRYBB2P43320 205 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 HCCSP53701 268 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 ATAD3BQ5T9A4 648 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 MFSD4BQ5TF39 518 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 NXNL2Q5VZ03 156 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 MRM1Q6IN84 353 aaKnown RBP15.79■□□□□ 0.12
USP28-208ENST00000540438 FIGLAQ6QHK4 219 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 WDR88Q6ZMY6 472 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 ZNF367Q7RTV3 350 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 TIMM29Q9BSF4 260 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 OR51V1Q9H2C8 321 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 C3orf14Q9HBI5 128 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 CYP8B1Q9UNU6 501 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 COLEC10Q9Y6Z7 277 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 H0YGG7 62 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 SLC35G6P0C7Q6 338 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 CD97P48960 835 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 TPMTP51580 245 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 ARF3P61204 181 aaPredicted RBP15.79■□□□□ 0.12
USP28-208ENST00000540438 ALG11Q2TAA5 492 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 C12orf73Q69YU5 71 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 ANKK1Q8NFD2 765 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 DMRTB1Q96MA1 342 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 OR2A14Q96R47 310 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 SDHCQ99643 169 aaPredicted RBP15.79■□□□□ 0.12
USP28-208ENST00000540438 CDCA4Q9BXL8 241 aa15.79■□□□□ 0.12
USP28-208ENST00000540438 MMP28Q9H239 520 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 429.1 ms