RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 DIRC3C9JPN6 131 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ATP6V1G2-DDX39BF2Z307 99 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 M0QZQ0 153 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 TLR4O00206 839 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 CACNB4O00305 520 aaPredicted RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 AP3D1O14617 1153 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SYN3O14994 580 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SLC28A2O43868 658 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SSX4O60224 188 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 GPX5O75715 221 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 BEST1O76090 585 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 AGFG2O95081 481 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 KCNK5O95279 499 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 GJB5O95377 273 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 RAB36O95755 333 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ADAP00813 363 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 FGBP02675 491 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 MMP2P08253 660 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ANXA5P08758 320 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ARSBP15848 533 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 GABRB1P18505 474 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 LAG3P18627 525 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ATF6P18850 670 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 TYMPP19971 482 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ZP3P21754 424 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 GALP22466 123 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 PRDX3P30048 256 aaKnown RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 SLC6A4P31645 630 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ZNF140P52738 457 aaPredicted RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 GBX2P52951 348 aaPredicted RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 CRISP1P54107 249 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 RAG2P55895 527 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 C21orf58P58505 322 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 HTRA4P83105 476 aaPredicted RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 VLDLRP98155 873 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 PITPNAQ00169 270 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 TIAL1Q01085 375 aaKnown RBP eCLIP6.19□□□□□ -1.42
USP28-202ENST00000535607 CACNG1Q06432 222 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SLC10A7Q0GE19 358 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SMARCB1Q12824 385 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 COX10Q12887 443 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 MTAPQ13126 283 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 HNRNPA0Q13151 305 aaKnown RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 IL18Q14116 193 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 MFSD13AQ14CX5 517 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ZNF79Q15937 498 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 AANATQ16613 207 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 NDUFA9Q16795 377 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 DUSP6Q16828 381 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 TCTN1Q2MV58 587 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 GGTA1PQ4G0N0 100 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ZRANB3Q5FWF4 1079 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 WSCD1Q658N2 575 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 GPR139Q6DWJ6 353 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 IL31Q6EBC2 164 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 TRIM40Q6P9F5 258 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 BRAT1Q6PJG6 821 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 PAQR9Q6ZVX9 377 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 UTS2BQ765I0 119 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 LRRC70Q7Z2Q7 622 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ADGRD2Q7Z7M1 963 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 GLRX5Q86SX6 157 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 FAM90A1Q86YD7 464 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SYT12Q8IV01 421 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 GPR65Q8IYL9 337 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SLC5A8Q8N695 610 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 NANOGP1Q8N7R0 232 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 SIDT2Q8NBJ9 832 aaKnown RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 TMIEQ8NEW7 156 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 OR8J1Q8NGP2 316 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ARRDC2Q8TBH0 407 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 CD200R1Q8TD46 325 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SELENOMQ8WWX9 145 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ELMO1Q92556 727 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 UFD1Q92890 307 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 RBPMSQ93062 196 aaKnown RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 ZNF689Q96CS4 500 aaPredicted RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 PDXPQ96GD0 296 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 PCED1BQ96HM7 432 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 SENP8Q96LD8 212 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 OPALINQ96PE5 141 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 PIP5K1AQ99755 562 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ACBD6Q9BR61 282 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 TMEM43Q9BTV4 400 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 HDHD2Q9H0R4 259 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 PPIL3Q9H2H8 161 aaKnown RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 DPAGT1Q9H3H5 408 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 FBXO44Q9H4M3 255 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 IKZF5Q9H5V7 419 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ERVMER34-1Q9H9K5 563 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 CD93Q9NPY3 652 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ZNF275Q9NSD4 429 aaPredicted RBP6.19□□□□□ -1.42
USP28-202ENST00000535607 MED9Q9NWA0 146 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 FBXO34Q9NWN3 711 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 MCUBQ9NWR8 336 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ZNF226Q9NYT6 803 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 FAM30AQ9NZY2 134 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 BTNL2Q9UIR0 455 aa6.19□□□□□ -1.42
USP28-202ENST00000535607 ZNF225Q9UK10 706 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms