RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FRMD6Q96NE9 622 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 SOSTQ9BQB4 213 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 ZNF649Q9BS31 505 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 PPP1R3EQ9H7J1 279 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 MRPS30Q9NP92 439 aaKnown RBP18.04■□□□□ 0.48
VPS28-213ENST00000530983 CLCA2Q9UQC9 943 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 NTNG1Q9Y2I2 539 aa18.04■□□□□ 0.48
VPS28-213ENST00000530983 SHISA3A0PJX4 238 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 AGRPO00253 132 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 EMC8O43402 210 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 F3P13726 295 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 AVPR1BP47901 424 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 PRR5P85299 388 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 ST3GAL3Q11203 375 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 CNIH2Q6PI25 160 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 LYPD8Q6UX82 237 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 NUP43Q8NFH3 380 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 OR9A2Q8NGT5 310 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 OR2L8Q8NGY9 312 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 JPH3Q8WXH2 748 aaPredicted RBP18.03■□□□□ 0.48
VPS28-213ENST00000530983 PRRG3Q9BZD7 231 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 WDR26Q9H7D7 661 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 IL23AQ9NPF7 189 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 CXXC1Q9P0U4 656 aaPredicted RBP18.03■□□□□ 0.48
VPS28-213ENST00000530983 KCNK6Q9Y257 313 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 PCDH8O95206 1070 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 HLA-DQB1P01920 261 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 THY1P04216 161 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 CSNK2A2P19784 350 aaPredicted RBP18.03■□□□□ 0.48
VPS28-213ENST00000530983 TGM3Q08188 693 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 RRM2BQ7LG56 351 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 GJD3Q8N144 294 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 CADM2Q8N3J6 435 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 FBXL6Q8N531 539 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 OR2L5Q8NG80 312 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 PIGXQ8TBF5 258 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 NR4A3Q92570 626 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 ELP4Q96EB1 424 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 TMED9Q9BVK6 235 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 HDHD5Q9BXW7 423 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 IRF2BPLQ9H1B7 796 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 SLC13A4Q9UKG4 626 aa18.03■□□□□ 0.48
VPS28-213ENST00000530983 TBC1D3BA6NDS4 549 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 OR52A4PA6NMU1 304 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 HPGDSO60760 199 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 NCR1O76036 304 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 FPR3P25089 353 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 P2RX3P56373 397 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 INSL4Q14641 139 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 P2RY14Q15391 338 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 FAM78AQ5JUQ0 283 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 LCN1P1Q5VSP4 162 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 AGBL4Q5VU57 503 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 SIGIRRQ6IA17 410 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 BBS1Q8NFJ9 593 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 RFKQ969G6 155 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 ATF6BQ99941 703 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 BEX2Q9BXY8 128 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 ANKRD19PQ9H560 264 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 C11orf49Q9H6J7 331 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 TBC1D17Q9HA65 648 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 IL20Q9NYY1 176 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 MALT1Q9UDY8 824 aa18.02■□□□□ 0.48
VPS28-213ENST00000530983 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 PRICKLE3O43900 615 aaPredicted RBP18.01■□□□□ 0.47
VPS28-213ENST00000530983 FCMRO60667 390 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 YES1P07947 543 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 CCNYL3P0C7X3 344 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 MLLT3P42568 568 aaPredicted RBP18.01■□□□□ 0.47
VPS28-213ENST00000530983 GPR4P46093 362 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 RAB8AP61006 207 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 IRF4Q15306 451 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 C6orf132Q5T0Z8 1188 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 VASNQ6EMK4 673 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 ABI3BPQ7Z7G0 1075 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 TRIM48Q8IWZ4 208 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 Q8N402 240 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 OR52E1Q8NGJ3 308 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 GRPEL2Q8TAA5 225 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 ENKURQ8TC29 256 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 ACOT11Q8WXI4 607 aaPredicted RBP18.01■□□□□ 0.47
VPS28-213ENST00000530983 GIMAP5Q96F15 307 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 MED30Q96HR3 178 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 ZNF681Q96N22 645 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 B3GAT2Q9NPZ5 323 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 RPRD1BQ9NQG5 326 aaKnown RBP18.01■□□□□ 0.47
VPS28-213ENST00000530983 GIMAP4Q9NUV9 329 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 PLEKHM1Q9Y4G2 1056 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 MID1O15344 667 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 KLF4O43474 513 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 SLC2A2P11168 524 aaPredicted RBP18.01■□□□□ 0.47
VPS28-213ENST00000530983 CELP19835 753 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 MPIP34949 423 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 GPLD1P80108 840 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 DSG2Q14126 1118 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 LTB4RQ15722 352 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 CEBPEQ15744 281 aa18.01■□□□□ 0.47
VPS28-213ENST00000530983 ZNF791Q3KP31 576 aaPredicted RBP18.01■□□□□ 0.47
VPS28-213ENST00000530983 LSRQ86X29 649 aaPredicted RBP18.01■□□□□ 0.47
VPS28-213ENST00000530983 KAT2AQ92830 837 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms