RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 LRMDAQ9H2I8 198 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 KAT8Q9H7Z6 458 aaKnown RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 ZCCHC3Q9NUD5 404 aaKnown RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 GPATCH2Q9NW75 528 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 ABCD2Q9UBJ2 740 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 PRODH2Q9UF12 536 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.87□□□□□ -1.31
CD44-228ENST00000528455 CD300AQ9UGN4 299 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 L3MBTL1Q9Y468 752 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 ZNF451Q9Y4E5 1061 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SNX8Q9Y5X2 465 aa6.87□□□□□ -1.31
CD44-228ENST00000528455 SMG1Q96Q15 3661 aaKnown RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 ATMQ13315 3056 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 IGHV1-45A0A0A0MS14 117 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 MYOCOSA0A1B0GUC4 107 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 A8MUA0 341 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 ASNA1O43681 348 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 PRAMEF2O60811 474 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 COQ9O75208 318 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 CREG1O75629 220 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 PSMG1O95456 288 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 DDAH2O95865 285 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 HMGN2P05204 90 aaKnown RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 GUSBP08236 651 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 CT62P0C5K7 136 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 HSD17B1P14061 328 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 DRD5P21918 477 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 F8A1P23610 371 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 HTR1EP28566 365 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 PGM1P36871 562 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 MC3RP41968 323 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 PPICP45877 212 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 MAN2A2P49641 1150 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 PRIM2P49643 509 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 EMDP50402 254 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 GZMMP51124 257 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 MVDP53602 400 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 PRKAG1P54619 331 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 SLC37A1P57057 533 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 NCALDP61601 193 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 DCAF7P61962 342 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 AP2B1P63010 937 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 PSPHP78330 225 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 RBBP4Q09028 425 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 CAPRIN1Q14444 709 aaKnown RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 LTB4RQ15722 352 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 EXT1Q16394 746 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 PIGGQ5H8A4 983 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 KIRREL2Q6UWL6 708 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 TMEM107Q6UX40 140 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 ZNF771Q7L3S4 317 aaPredicted RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 NET1Q7Z628 596 aaPredicted RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 CALHM3Q86XJ0 350 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 FBXW8Q8N3Y1 598 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 CDRT4Q8N9R6 151 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 C17orf47Q8NEP4 570 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 TNIP2Q8NFZ5 429 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 OR5L2Q8NGL0 311 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 SLC2A12Q8TD20 617 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 ADAMTS15Q8TE58 950 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 ZNF721Q8TF20 911 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 TSLPQ969D9 159 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 GIMAP5Q96F15 307 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 STACQ99469 402 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 WDR77Q9BQA1 342 aaPredicted RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 THTPAQ9BU02 230 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 CADM1Q9BY67 442 aaKnown RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 ACTRT3Q9BYD9 372 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 OR10A5Q9H207 317 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 PIGUQ9H490 435 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 TMEM38AQ9H6F2 299 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 GPN2Q9H9Y4 310 aaPredicted RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 CPNE5Q9HCH3 593 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 DDX18Q9NVP1 670 aaKnown RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 CMTM6Q9NX76 183 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 ADA2Q9NZK5 511 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 COPS7AQ9UBW8 275 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 BCAP29Q9UHQ4 241 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 FAF1Q9UNN5 650 aaPredicted RBP6.86□□□□□ -1.31
CD44-228ENST00000528455 LIPT1Q9Y234 373 aa6.86□□□□□ -1.31
CD44-228ENST00000528455 RNF103-CHMP3A0A140T963 221 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 ELOVL7A1L3X0 281 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 PRORSD1PA6NEY8 169 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 CFAP73A6NFT4 308 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 SAGE2PA6NJ88 616 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 PEX12O00623 359 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 NME4O00746 187 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 SOCS6O14544 535 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 ZFAND5O76080 213 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 NKX2-2O95096 273 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 TFPTP0C1Z6 253 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 CD247P20963 164 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 ME2P23368 584 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 CRATP43155 626 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 CLCN2P51788 898 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 SLC7A2P52569 658 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 SOX8P57073 446 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 SLC26A5P58743 744 aa6.85□□□□□ -1.31
CD44-228ENST00000528455 MRPS35P82673 323 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms