RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 GPR18Q14330 331 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 KIR2DS5Q14953 304 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 SOWAHCQ53LP3 525 aaPredicted RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 FAM111BQ6SJ93 734 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 TRIM73Q86UV7 250 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 SLC22A16Q86VW1 577 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 PHC2Q8IXK0 858 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 PARP16Q8N5Y8 322 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 SLC16A11Q8NCK7 471 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CCL4L1Q8NHW4 92 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 BAHD1Q8TBE0 780 aaPredicted RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 ZCCHC10Q8TBK6 192 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 GPBAR1Q8TDU6 330 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 SLC9A6Q92581 669 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 COL26A1Q96A83 441 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 SLC41A3Q96GZ6 507 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 FCRL4Q96PJ5 515 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 STACQ99469 402 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CCDC32Q9BV29 185 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CNPPD1Q9BV87 410 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 GSDMCQ9BYG8 508 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 RNF167Q9H6Y7 350 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 POLE3Q9NRF9 147 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 ABCB10Q9NRK6 738 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 DUSP22Q9NRW4 184 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 IL20Q9NYY1 176 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 FBXL21Q9UKT6 434 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 GPR55Q9Y2T6 319 aaPredicted RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 TRBV23OR9-2A0A075B6M9 112 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 H0Y8X5 98 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 P2RX6O15547 441 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 FCMRO60667 390 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 STX11O75558 287 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 IL1AP01583 271 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 ATP1B1P05026 303 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 HBQ1P09105 142 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 NDUFV2P19404 249 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 ZNF628Q5EBL2 1059 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 EXOSC6Q5RKV6 272 aaKnown RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 TYW3Q6IPR3 259 aaKnown RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 RNF44Q7L0R7 432 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 GDF7Q7Z4P5 450 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 HMGN2P46Q86SG4 172 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CCDC190Q86UF4 302 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 LAPTM4BQ86VI4 370 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 RNF113BQ8IZP6 322 aaKnown RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 ZNF619Q8N2I2 560 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CLIP4Q8N3C7 705 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 DNAJC5GQ8N7S2 189 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CDRT4Q8N9R6 151 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 ANKK1Q8NFD2 765 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 OR10G6Q8NH81 332 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 RNFT2Q96EX2 444 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 FAM46AQ96IP4 442 aaKnown RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 SDF2Q99470 211 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 EGLN3Q9H6Z9 239 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CTPS2Q9NRF8 586 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 ZNF229Q9UJW7 825 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 DOLKQ9UPQ8 538 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 TRAPPC4Q9Y296 219 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CA5BQ9Y2D0 317 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CHD9Q3L8U1 2897 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 A0A0J9YY10 115 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 PRAMEF26H0Y7S4 382 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 H0YGG7 62 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 BOLA2-SMG1P6H3BVE0 249 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 TBX1O43435 398 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 KLF4O43474 513 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 PLOD3O60568 738 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 FMO6PO60774 539 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 GPR75O95800 540 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 TSPAN19P0C672 248 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 SOX3P41225 446 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 CCR5P51681 352 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 ARF3P61204 181 aaPredicted RBP13.87□□□□□ -0.19
NUP54-217ENST00000514987 EEF1A1P68104 462 aaKnown RBP13.87□□□□□ -0.19
NUP54-217ENST00000514987 SIM1P81133 766 aaPredicted RBP13.87□□□□□ -0.19
NUP54-217ENST00000514987 DNASE1L3Q13609 305 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 TPBGQ13641 420 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 DUSP5Q16690 384 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 FHL5Q5TD97 284 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 Q6ZSR6 202 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 WDR53Q7Z5U6 358 aaPredicted RBP13.87□□□□□ -0.19
NUP54-217ENST00000514987 RBM12BQ8IXT5 1001 aaKnown RBP13.87□□□□□ -0.19
NUP54-217ENST00000514987 ZG16BQ96DA0 208 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 SLC30A2Q9BRI3 323 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 PLA2G12AQ9BZM1 189 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 MCOLN1Q9GZU1 580 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 ZNF350Q9GZX5 532 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 ANKRA2Q9H9E1 313 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 SMURF1Q9HCE7 757 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 CPNE7Q9UBL6 633 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 CHST2Q9Y4C5 530 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 PCDHGB6Q9Y5F9 930 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 CDH10Q9Y6N8 788 aa13.87□□□□□ -0.19
NUP54-217ENST00000514987 ATG2BQ96BY7 2078 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 MKI67P46013 3256 aaKnown RBP13.86□□□□□ -0.19
NUP54-217ENST00000514987 IQCMA0A1B0GVH7 501 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 TRAPPC13A5PLN9 417 aa13.86□□□□□ -0.19
NUP54-217ENST00000514987 FRS3O43559 492 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms