RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SYT14Q8NB59 555 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 RHOXF1Q8NHV9 184 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ADAMTS16Q8TE57 1224 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ORAI3Q9BRQ5 295 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 DPCDQ9BVM2 203 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 TMEM121BQ9BXQ6 578 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 OR2B2Q9GZK3 357 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 QRSL1Q9H0R6 528 aaKnown RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 SLC2A4RGQ9NR83 387 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 HPF1Q9NWY4 346 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 VNN3Q9NY84 501 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ABCD2Q9UBJ2 740 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 SCP2D1Q9UJQ7 156 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 A0A1B0GVI7 797 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 A0A1W2PQ09 198 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 LYRM1O43325 122 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 LDB3O75112 727 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 CSTBP04080 98 aaKnown RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 ULK3Q6PHR2 472 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 PTRH1Q86Y79 214 aaKnown RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 SLC7A5P1Q8MH63 180 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ATG5Q9H1Y0 275 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 DDX31Q9H8H2 851 aaKnown RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 GPN2Q9H9Y4 310 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 PDE7BQ9NP56 450 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 LOC105369274A0A096LPK9 316 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 PRKYO43930 277 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ZNF888P0CJ79 500 aaPredicted RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 GRK1Q15835 563 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ABCA11PQ4W5N1 156 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 HES5Q5TA89 166 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 TRIM46Q7Z4K8 759 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 GKN2Q86XP6 184 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 RBM12BQ8IXT5 1001 aaKnown RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 OR4N4Q8N0Y3 316 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 GDPD1Q8N9F7 314 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 COQ8AQ8NI60 647 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 ITPKCQ96DU7 683 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 CNN2Q99439 309 aaKnown RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 CMKLR1Q99788 373 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 IL37Q9NZH6 218 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 MGAT4CQ9UBM8 478 aa11.97□□□□□ -0.49
USP53-209ENST00000514665 AK6Q9Y3D8 172 aaKnown RBP11.97□□□□□ -0.49
USP53-209ENST00000514665 CDC40O60508 579 aaKnown RBP eCLIP11.96□□□□□ -0.49
USP53-209ENST00000514665 B3GALT4O96024 378 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 PVRP15151 417 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 CSNK1DP48730 415 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 CAV3P56539 151 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 S100A10P60903 97 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 CDK3Q00526 305 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 ANKRD34AQ69YU3 496 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 TMEM225Q6GV28 225 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 OR52E1Q8NGJ3 308 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 HIST1H2AAQ96QV6 131 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 ZNF471Q9BX82 626 aaPredicted RBP11.96□□□□□ -0.49
USP53-209ENST00000514665 PPIL3Q9H2H8 161 aaKnown RBP11.96□□□□□ -0.49
USP53-209ENST00000514665 LTB4R2Q9NPC1 389 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 RXFP3Q9NSD7 469 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 HS3ST2Q9Y278 367 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 MAB21L2Q9Y586 359 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 SPAG17Q6Q759 2223 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 TRBV4-1A0A0J9YWV2 114 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 SBK3P0C264 359 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 ARAFP10398 606 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 PTGS2P35354 604 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 ALDH3B2P48448 385 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 CTXN1P60606 82 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 PLCXD2Q0VAA5 305 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 FGFBP1Q14512 234 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.96□□□□□ -0.49
USP53-209ENST00000514665 PIP5KL1Q5T9C9 394 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 GLT8D1Q68CQ7 371 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 OLIG3Q7RTU3 272 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 DNAJC22Q8N4W6 341 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 OR4F15Q8NGB8 312 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 MUL1Q969V5 352 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 MSANTD3Q96H12 275 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 METTL2AQ96IZ6 378 aaKnown RBP11.96□□□□□ -0.49
USP53-209ENST00000514665 ZFYVE21Q9BQ24 234 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 TPSD1Q9BZJ3 242 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 OR10A4Q9H209 315 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 STARD5Q9NSY2 213 aa11.96□□□□□ -0.49
USP53-209ENST00000514665 RAD1O60671 282 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 PTHP01270 115 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 GASTP01350 101 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 F11P03951 625 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 HIST1H1TP22492 207 aaPredicted RBP11.96□□□□□ -0.5
USP53-209ENST00000514665 HHEXQ03014 270 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 BCL7AQ4VC05 210 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 COX20Q5RI15 118 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 VRK2Q86Y07 508 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 OR8J2Q8NGG1 315 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 OR2L2Q8NH16 312 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 SPRYD4Q8WW59 207 aaPredicted RBP11.96□□□□□ -0.5
USP53-209ENST00000514665 TREM1Q9NP99 234 aa11.96□□□□□ -0.5
USP53-209ENST00000514665 TEX13DA0A0J9YY54 714 aaPredicted RBP11.95□□□□□ -0.5
USP53-209ENST00000514665 A0A1B0GTL3 188 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 OR5K4A6NMS3 321 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 HIDE1A8MVS5 230 aa11.95□□□□□ -0.5
USP53-209ENST00000514665 H0YIV9 168 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms