RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ADAMTS15Q8TE58 950 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 SORCS1Q8WY21 1168 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 NINJ1Q92982 152 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 RBMXL1Q96E39 390 aaKnown RBP3.4□□□□□ -1.86
USP53-205ENST00000509769 ZDHHC15Q96MV8 337 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 DGAT2Q96PD7 388 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 DCLRE1CQ96SD1 692 aaKnown RBP3.4□□□□□ -1.86
USP53-205ENST00000509769 SPON2Q9BUD6 331 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 TAPBPLQ9BX59 468 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 HDAC8Q9BY41 377 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 CTDSP1Q9GZU7 261 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 POLR3FQ9H1D9 316 aaPredicted RBP3.4□□□□□ -1.86
USP53-205ENST00000509769 PLEKHA2Q9HB19 425 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 BEX1Q9HBH7 125 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 NOX3Q9HBY0 568 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 MIOSQ9NXC5 875 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 FBXO5Q9UKT4 447 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 NIP7Q9Y221 180 aaKnown RBP eCLIP3.4□□□□□ -1.86
USP53-205ENST00000509769 RASD1Q9Y272 281 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 ROBO3Q96MS0 1386 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 SCN7AQ01118 1682 aa3.4□□□□□ -1.86
USP53-205ENST00000509769 TMEM238LA0A1B0GVL6 79 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 A6NJY4 79 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 GLOD5A6NK44 160 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 VSTM5A8MXK1 200 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 K7EQM0 130 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 TOR1BO14657 336 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 WNT9AO14904 365 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 ARPC5O15511 151 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 WDR1O75083 606 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CLDN9O95484 217 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 SCGB1D2O95969 90 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 TRBC1P01850 177 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 OPN1MWP04001 364 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 OPN1MW2P0DN77 364 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 OPN1MW3P0DN78 364 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CBSLP0DN79 551 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CD99P14209 185 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 KCNE1P15382 129 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CBSP35520 551 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 GCGRP47871 477 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 NPBWR2P48146 333 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 KCNJ3P48549 501 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 BMXP51813 675 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CARD18P57730 90 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 B2MP61769 119 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 PAFAH1B2P68402 229 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 MLLT11Q13015 90 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 KCNC3Q14003 757 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 P2RY14Q15391 338 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 HLFQ16534 295 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 HIST3H3Q16695 136 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 SUPT20HL1Q3ZLR7 823 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 SLC36A2Q495M3 483 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 MSS51Q4VC12 460 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 SFT2D3Q587I9 215 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 DNLZQ5SXM8 178 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 UBE2UQ5VVX9 321 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 LIPKQ5VXJ0 399 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 B3GNTL1Q67FW5 361 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 DET1Q7L5Y6 550 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 APTXQ7Z2E3 356 aaKnown RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 LYSMD3Q7Z3D4 306 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 BMP8AQ7Z5Y6 402 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 LSRQ86X29 649 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 ZNF440Q8IYI8 595 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CMTM1Q8IZ96 169 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 GCNT2Q8N0V5 402 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 NLGN4XQ8N0W4 816 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 LILRB2Q8N423 598 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 ZNF321PQ8N8H1 164 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 SYT14Q8NB59 555 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 NLGN4YQ8NFZ3 816 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 OR10H4Q8NGA5 316 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 OR52L2PQ8NGH6 319 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 OR13C9Q8NGT0 318 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 OR51F2Q8NH61 342 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 BLNKQ8WV28 456 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 NSUN4Q96CB9 384 aaKnown RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 ZBED6CLQ96FA7 236 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 SDSLQ96GA7 329 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 COPS8Q99627 209 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 NPAS1Q99742 590 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 SLC6A7Q99884 636 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 GLIS2Q9BZE0 524 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 ASB8Q9H765 288 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 MRPS30Q9NP92 439 aaKnown RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 CENPMQ9NSP4 180 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 C1orf123Q9NWV4 160 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 P2RX2Q9UBL9 471 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 GDF2Q9UK05 429 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 PCTPQ9UKL6 214 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 ZNF490Q9ULM2 529 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 TRAV6A0A075B6T7 132 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 A0A087WZ62 844 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 LRIT2A6NDA9 550 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 ZNF98A6NK75 572 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 HSPB2A8KAH6 182 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 USP17L5A8MUK1 530 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 USP17L15C9J2P7 530 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms