RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ASB18Q6ZVZ8 466 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 RNF130Q86XS8 419 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 HPS6Q86YV9 775 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 GPALPP1Q8IXQ4 340 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 CYP4Z2PQ8N1L4 340 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 DPP10Q8N608 796 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 COX18Q8N8Q8 333 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 PCYOX1LQ8NBM8 494 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 SLC16A11Q8NCK7 471 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 ADAMTS15Q8TE58 950 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 ZFP90Q8TF47 636 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 PIK3R3Q92569 461 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 HAS2Q92819 552 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 TMBIM1Q969X1 311 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 CMTM5Q96DZ9 223 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 SPACA9Q96E40 222 aaPredicted RBP9.24□□□□□ -0.93
NUP54-203ENST00000504173 OMA1Q96E52 524 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 AURKBQ96GD4 344 aaPredicted RBP9.24□□□□□ -0.93
NUP54-203ENST00000504173 OR7D2Q96RA2 312 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 STACQ99469 402 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 RNF32Q9H0A6 362 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.24□□□□□ -0.937e-10■■■■■ 34.7
NUP54-203ENST00000504173 OR51I1Q9H343 314 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 RAD21L1Q9H4I0 556 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 TPT1P8Q9HAU6 139 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 IL1RL2Q9HB29 575 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 RYDENQ9NUL5 291 aaKnown RBP9.24□□□□□ -0.93
NUP54-203ENST00000504173 HPF1Q9NWY4 346 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 VAPAQ9P0L0 249 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 SLAMF8Q9P0V8 285 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 MRTO4Q9UKD2 239 aaKnown RBP9.24□□□□□ -0.93
NUP54-203ENST00000504173 CBLCQ9ULV8 474 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 NPFFR2Q9Y5X5 522 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 SHANK1Q9Y566 2161 aa9.24□□□□□ -0.93
NUP54-203ENST00000504173 TNRC6AQ8NDV7 1962 aaKnown RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 GXYLT2A0PJZ3 443 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 DUXAA6NLW8 204 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 EVPLLA8MZ36 301 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 CLIC1O00299 241 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 CDK2AP1O14519 115 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 AIM2O14862 343 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 DPM1O60762 260 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 REM1O75628 298 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 C1QCP02747 245 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 FBXO45P0C2W1 286 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 HOXB9P17482 250 aaPredicted RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 PPIBP23284 216 aaKnown RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 IL12BP29460 328 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 CD96P40200 585 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 MAP3K8P41279 467 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 RFX3P48380 749 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 HLCSP50747 726 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 POU6F2P78424 691 aaPredicted RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 CBX1P83916 185 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 OR1C1Q15619 314 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 DECR1Q16698 335 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 TRMT5Q32P41 509 aaKnown RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 CYP27C1Q4G0S4 372 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 EXOSC6Q5RKV6 272 aaKnown RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 ZNF468Q5VIY5 522 aaPredicted RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 LYPD8Q6UX82 237 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 IGFL3Q6UXB1 125 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 DLEU7Q6UYE1 221 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 MCEMP1Q8IX19 187 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 MSRB3Q8IXL7 192 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 DND1Q8IYX4 353 aaKnown RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 HORMAD2Q8N7B1 307 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 FAM13CQ8NE31 585 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 OR4N2Q8NGD1 307 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 OR52N2Q8NGI0 321 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 OR5D16Q8NGK9 328 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 OR5M3Q8NGP4 307 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 MIPOL1Q8TD10 442 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 HOXB13Q92826 284 aaPredicted RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 CDS1Q92903 461 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 RCN3Q96D15 328 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 RMND5BQ96G75 393 aaPredicted RBP9.23□□□□□ -0.93
NUP54-203ENST00000504173 SLC35A4Q96G79 324 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 CGREF1Q99674 301 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 PIGUQ9H490 435 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 SERHL2Q9H4I8 314 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 DUSP22Q9NRW4 184 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 GID8Q9NWU2 228 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 SLC25A37Q9NYZ2 338 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 LRFN1Q9P244 771 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 MAP10Q9P2G4 905 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 PCDHGB3Q9Y5G1 929 aa9.23□□□□□ -0.93
NUP54-203ENST00000504173 DCHS2Q6V1P9 2916 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 TRBV5-3A0A0A0MS03 114 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 TTLL8A6PVC2 850 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 TP53I11O14683 189 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 ASNA1O43681 348 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 HS6ST1O60243 411 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 PPM1BO75688 479 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 SOX30O94993 753 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 UNC5CO95185 931 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 AGR2O95994 175 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 OR12D1P0DN82 309 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 CD46P15529 392 aa9.22□□□□□ -0.93
NUP54-203ENST00000504173 NAGAP17050 411 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms